BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2867.p (373 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 132 2e-32 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 122 4e-29 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 80 2e-16 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 72 4e-14 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 180/385 (46%), Gaps = 40/385 (10%) Query: 1 MKKLAFTLTALGLTQLTGLAYAQSSSVTVYGVIDMSLVYTNKVGPNNSSRMSLDSGDAMA 60 MKK L LG G A AQSS VTVYG++DM + + N + SG+ A Sbjct: 1 MKKSLLALAVLG--AFAGAASAQSS-VTVYGIVDMGITSQDTGAGANDRLNGVTSGNQSA 57 Query: 61 SRIGVRGKEELGGGLAAVFQLENGFAADDGAMSTPG--TLFDRKSVVGLSGRYGTLTLGR 118 SRIG +G E+LG GL A F LE AAD G +S T F+R + VGLSG +G + LGR Sbjct: 58 SRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLGR 117 Query: 119 QTDYLEEIGLQYSSFQIFGGGG----VRAGHFNSLDRLTGARTSNSLRFDTAEVNGFMGS 174 Q +++ Y + FG GG + A FN+ + R SNS+++ + +GF Sbjct: 118 QVSAIKD---AYDAIDPFGDGGTIAPISAIFFNAALKGDNGRISNSIKYTSNSYSGFKFG 174 Query: 175 LFYGFGEVAGQTSAGQAFGVGANYRNGNAGIGAAYY---QSKLAADALPAHAGDSDLKTF 231 Y FGE AG+T A +G+ Y NG + Y S A D TF Sbjct: 175 AHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFKPVKNSKDKMTF 234 Query: 232 TLGASYQAGPAKLFAAWSQVRRPTQQPLAATGLVAITSATRANVFDVGVDYALDAKLHLL 291 LGA+Y G AKL AA+ + QP+A + + R + +GV + A ++ Sbjct: 235 -LGATYDFGVAKLHAAYGDSK---NQPVAGN----VDNKYRN--YMLGVSAKVGAAGSIM 284 Query: 292 AS-VIHDRADLARSGSGATRGHTTQFNLGVDYF--LSKRTDVYAMASRQAASAVINPGVI 348 AS ++D R+ G G+ Y LSKRT++YA S + Sbjct: 285 ASYTVND----TRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHTSND-------- 332 Query: 349 SAAYSSAPADDSSQNVLRIGVRHKF 373 A +A D S ++ +GVRHKF Sbjct: 333 KNAKLNALVADQSGSMFAVGVRHKF 357 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 122 bits (305), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 126/412 (30%), Positives = 186/412 (45%), Gaps = 59/412 (14%) Query: 1 MKKLAFTLTALGLTQLTGL---AYAQSSSVTVYGVIDMSLVYTNKVGPNNSSRMSLDSGD 57 M F + LT TG+ A AQ+ VT+YG+ D+++VY++ G +S + SG+ Sbjct: 1 MTARNFVVLVAALTLYTGVLQNAGAQNG-VTIYGIADVAMVYSSNQG--GASNTYMRSGN 57 Query: 58 AMASRIGVRGKEELGGGLAAVFQLENGFAADDGAMSTPGTLFDRKSVVGLSG-RYGTLTL 116 SRIG +G E+LGGG A+FQLE+GF D G MS+ TLF+R++ VG++ RYG LT Sbjct: 58 LAGSRIGFKGTEDLGGGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTA 117 Query: 117 GRQ-TDYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEVNGFMGSL 175 GRQ T Y +G + + G G G + LD T R++NS+ + + NG S Sbjct: 118 GRQYTPYYLFVGPIGPTNSLTGATGAHPGDIDGLD--TTIRSNNSITYTSPVWNGLQVSA 175 Query: 176 FYGFGEVAGQTSAGQAFGVGANYRNGNAGIGAAY------------YQSKLAA--DALPA 221 GFGE AG +G+ Y N Y + +A + P Sbjct: 176 LAGFGETAGDMGSGRTISAAIKYDINNWNFALGYQRLNNSNNPGGVWSPNASANFNTSPV 235 Query: 222 HAG--DSDLKTFTLGAS-YQAGPAKLFAAWSQVR-RP------TQQPLAATGLVAITSAT 271 + G +D + GA+ Y G + A S+V RP TQ+ T L +T Sbjct: 236 NNGYLSADSAQYLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKATFDT-LGLLTGYQ 294 Query: 272 RANVFDVGVDYALDAKLHLLASVIHDRADLARSGSGATRGHTTQFNLGVDYFLSKRTDVY 331 VF V V Y+ + + A S + H Q L Y SKRT +Y Sbjct: 295 MTPVFFVSVGYS------------YTKEKAANGISDPAKYH--QLALEQTYSFSKRTAIY 340 Query: 332 AMASRQAAS----------AVINPGVISAAYSSAPADDSSQNVLRIGVRHKF 373 + + Q A V V+ + + P+D ++Q V +G+RH F Sbjct: 341 FLEAYQVAKGNTLGLGGSGPVRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 130/324 (40%), Gaps = 58/324 (17%) Query: 25 SSVTVYGVIDMSLVYTNKVGPNNSSRMSLDS-GDAMASRIGVRGKEELGGGLAAVFQLEN 83 SS+++YG ID + + + S L S G+ +R+G++G E LGGGL F LE+ Sbjct: 32 SSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHLES 91 Query: 84 GFAADDGAMSTPGT-LFDRKSVVGLSGRYGTLTLGRQTDYLEEIGLQYSSFQ-----IFG 137 GF G + LF+R S +G++G +G+L GRQ + Y FQ I Sbjct: 92 GFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYRYVHIIP 151 Query: 138 GGGVRAGHFN-----SLDRLTGARTSNSLRFDTAEVNGFMGSLFYGFGEVAGQTSAGQAF 192 G AG+ + + G R SN ++ + F S Y GEV G A Sbjct: 152 LAGAVAGNLDGRVSRPFGTVDGPRFSNGAQY-FGKFGSFTASAEYIMGEVPGSNRNQAAK 210 Query: 193 GVGANYRNGNAGIGAAYYQSK-----LAA-----------------DALPAHAG------ 224 VG Y +G +G AY + +AA DAL G Sbjct: 211 AVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQTTFGGGYKIDALRITGGYLKTTT 270 Query: 225 --DSDLKTFTLGASYQAGP-AKLFAAWSQVRRPTQQPLAATGLVAITSATRANVFDVGVD 281 S K LGA Y P A L A + + T Q A R N+ VG Sbjct: 271 AITSQAKNIWLGARYDFTPAASLTAGYYRTTLETAQSEIA----------RRNLLIVGAT 320 Query: 282 YALDAKLHLLA----SVIHDRADL 301 YAL + L A +V+H A L Sbjct: 321 YALSPRTSLYADIDQAVLHGLASL 344 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 150/374 (40%), Gaps = 81/374 (21%) Query: 49 SRMSLDSGDAMASRIGVRGKEELGGGLAAVFQLENGFAADDGAMS--TPGTLFDRKSVVG 106 S+ ++S S GV+G E LGGGL A F L + F D GA T+F R + VG Sbjct: 53 SKSVVNSSGMETSWWGVKGTENLGGGLQAQFALSSFFRPDTGAQGRFDSDTMFSRDAHVG 112 Query: 107 LSGRYGTLTLGRQTDYLEEIGLQYSSFQIFGG--------------GGVRAGHFNSLDRL 152 LSG +G +++GR L + +F FGG G G S Sbjct: 113 LSGSFGRVSVGRD---LAPNFIPTLTFSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVA 169 Query: 153 TGARTSNSLRFDTAEVNGFMGSLFYGFGEVAGQTSAGQAFGVGANYRNGNAGIGAAYYQS 212 SN + + ++ GF SLF+ FGE AG+ +G Y G G AY+QS Sbjct: 170 GDTGWSNEIMYVMPKLGGFTTSLFFQFGEQAGKPGKNN-YGANTMYEQGPLSFG-AYFQS 227 Query: 213 KLAADALPA-HAGDSDLKTFT---------------------LGASYQAGPAKLFAAWSQ 250 + L + +GDS + TFT +G +Y KLF + Sbjct: 228 VKVNNPLDSVTSGDSRVFTFTPYNQATGATYTLAASRNDTWFVGGAYDLQFMKLFGTLN- 286 Query: 251 VRRPTQQPLAATGLVAITSAT----RANVFDVGVDYALDAKLHLLASV-IHDRAD----- 300 + L+ I + + ++N +G + L + + +AD Sbjct: 287 --------YSTNRLIGIANDSQYDLKSNTVQLGTSVPVGKGSVLFSWARTNVKADGDFSA 338 Query: 301 -LARSGSGATRGHTTQFNLGVDYFLSKRTDVYAMASRQAASAVINPGVISAAYSSAPADD 359 L +G ++ T +LG DYFLSKRTDVY++ S + D Sbjct: 339 VLGGAGGKSSIIRNTA-SLGYDYFLSKRTDVYSVVSYDKLT-----------------DQ 380 Query: 360 SSQNVLRIGVRHKF 373 S+ L +G+R +F Sbjct: 381 STGISLGVGIRQRF 394 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 652,935 Number of extensions: 28077 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 4 Length of query: 373 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 290 Effective length of database: 726,862 Effective search space: 210789980 Effective search space used: 210789980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)