BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2864.p (479 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog... 270 1e-73 gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde deh... 137 1e-33 gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona... 108 7e-25 >gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Herminiimonas arsenicoxydans] Length = 492 Score = 270 bits (690), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/450 (36%), Positives = 248/450 (55%), Gaps = 10/450 (2%) Query: 22 LDSHNPANGQVMGRFPQSDASEVAAAVAAARRAQAAWAAQSLQERREHLHRVADAIAANA 81 D NPA+G ++G P A E A+ AA+ A AWAA++ +ER + + D I AN Sbjct: 34 FDISNPADGSIIGSAPNMGAEETETAIRAAQSAFPAWAAKTGKERAIIMRQWFDLIIANV 93 Query: 82 ERLATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWTRATASLELASEVVFEDETRRDEL 141 + LA L+T EQG+PL + + G+ F W E R + + +AS + D +R Sbjct: 94 DDLAILMTAEQGKPLIESRGEVIYGASFIEWFSEEAKRVSGDV-MAS--TWND--KRTLT 148 Query: 142 HRKPYGVIAAIAPWNWPLMISIWQVIPAIYAGNTVVLKPSEYTSVCGLELARVIAQA-LP 200 ++P G+ AAI PWN+P+ + +V PA+ AG T+V+KP+E T + L +A + +A LP Sbjct: 149 IKQPIGICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSALAIAELAHRAGLP 208 Query: 201 PGVLNTVSGDGS----VGAMLVEHSDVNKIMFTGSGATGARIVAAAARNLTPTTMELGGN 256 GV+N ++ D VG L V + FTGS G ++ A + +ELGG+ Sbjct: 209 AGVINVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTVKKIALELGGH 268 Query: 257 DAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAKRLYVPDALHDQIVAELKAIIAATPMG 316 IV DDAD A G + N GQTC C R YV ++++D V +L A A +G Sbjct: 269 APFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHESIYDVFVQKLAAGAARIKVG 328 Query: 317 DGLQPGMAMGPVQNPMQLKKVAALVDSARQEGATIVCGGVLPEGPGNFYPLTLVTDIRDG 376 +G + G+ GP+ + ++KV V A ++GA+++ GG G+FY T++++I D Sbjct: 329 NGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHALGGHFYEPTVLSNITDD 388 Query: 377 ARLVDEEQFGPVLPIIRYSTLDEAIANANRLDVGLGASVWSRDAQRAAQVATRLQAGTVW 436 ++ EE FGPV I+++ T DEAIA AN D GL + ++RD R +VA +L+ G V Sbjct: 389 MSIMHEETFGPVAAIVKFKTEDEAIAAANNTDFGLASYFYARDISRVWRVAEKLEYGMVG 448 Query: 437 VNQHGMVHPMVPFGGNKRSGWGLEFGNEGL 466 +N + + + PFGG K+SG G E G+ Sbjct: 449 INTGLISNEVAPFGGVKQSGLGREGSKYGI 478 >gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein [Herminiimonas arsenicoxydans] Length = 506 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 137/493 (27%), Positives = 224/493 (45%), Gaps = 35/493 (7%) Query: 3 IEHIA----SNIIGGQLHPGSRLLDSHNPANGQVMGRFPQSDASEVAAAVAAARRAQAAW 58 IEH +N +GG P NPA G++ + ++V AVAAA+ A AW Sbjct: 9 IEHYINGNLTNTVGGGQQP------VFNPATGEISANVVLASDADVQTAVAAAKAAAPAW 62 Query: 59 AAQSLQERREHLHRVADAIAANAERLATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWT 118 A + +R L + D I + LA +T E G+ + G + C Sbjct: 63 AEMAPLKRARILFKFKDLIERHHNDLAAAITREHGKVFSDAKGEVTRGLEVVEFAC---- 118 Query: 119 RATASLELASEVVFEDETRR--DELH-RKPYGVIAAIAPWNWPLMISIWQVIPAIYAGNT 175 + + F D D + R+P GV A I P+N+P M+ +W A+ GNT Sbjct: 119 ----GVPQLLKTQFSDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNT 174 Query: 176 VVLKPSEYTSVCGLELARVIAQA-LPPGVLNTVSGDGSVGAMLVEHSDVNKIMFTGSGAT 234 +LKPSE L +A ++ QA LP GV N + GD L++H D+ + F GS Sbjct: 175 FILKPSERDPSPSLMVAELLHQAGLPDGVFNVLQGDKRAVDGLLQHPDIKAVSFVGSTPI 234 Query: 235 GARIVAAAA--RNLTPTTME-LGG-NDAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAK 290 I A A + P ++ LGG + +V+ DA+ + L A+ + G+ C Sbjct: 235 AEYIYQAGAARKGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAIS 294 Query: 291 RLYVPDALHDQIVAELKAIIAATPMGDGLQPGMAMGPVQNPMQLKKVAALVDSARQEGAT 350 ++ D++VA L + + + +G++ MGPV + K+ +++ + GA Sbjct: 295 VAVAVGSVADKLVAALIPRVKSLKVKNGMESDAEMGPVVSAAHKAKIEGYIEAGIKSGAK 354 Query: 351 IVCG--GVLPEGPGNFYPL--TLVTDIRDGARLVDEEQFGPVLPIIRYSTLDEAIANANR 406 ++ G+ +G N + L L ++ + EE FGPVL ++R A+ N Sbjct: 355 LLVDGRGLTVDGHSNGFFLGGCLFDNVTPEMTIYQEEIFGPVLCVVRVPDFSAALDLINA 414 Query: 407 LDVGLGASVWSRDAQRAAQVATRLQAGTVWVNQHGMVHPMV--PFGGNKRSGWG--LEFG 462 + G G ++++ D A + + R++ G V +N V PM FGG KRS +G +G Sbjct: 415 HEFGNGVALFTSDGNTAREFSRRVEIGMVGINVPIPV-PMAWHSFGGWKRSMFGDTHAYG 473 Query: 463 NEGLKGVTQPQVI 475 EG+K T+ + I Sbjct: 474 EEGIKFYTRYKSI 486 >gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Herminiimonas arsenicoxydans] Length = 1224 Score = 108 bits (269), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 114/446 (25%), Positives = 191/446 (42%), Gaps = 34/446 (7%) Query: 26 NPAN-GQVMGRFPQSDASEVAAAVAAARRAQAAWAAQSLQERREHLHRVADAIAANAERL 84 NPA+ V+G +++A +V A+A A W + ER L A+ +A Sbjct: 584 NPADHSDVLGTAVEANADDVERALALAIAGAEKWQKTAPSERAGILLNAAELFQQHAPEF 643 Query: 85 ATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWTRATASLELASEVVFEDETRRDELHRK 144 L E G+ L P + EL + R ++ +++ + Sbjct: 644 IALSVREAGKTL--------PNAIGELRETIDFLRYYSAQITTAQM------------EQ 683 Query: 145 PYGVIAAIAPWNWPLMISIWQVIPAIYAGNTVVLKPSEYTSVCGLELARVIAQA-LPPGV 203 G++A I+PWN+PL I Q+ A+ AGN V+ KP+E T + +++ QA +P V Sbjct: 684 ALGLVACISPWNFPLSIFTGQLSAALAAGNAVLAKPAEQTPLIAFRAVQLMHQAGVPEDV 743 Query: 204 LNTVSGDG-SVGAMLVEHSDVNKIMFTGSGATGARI------VAAAARNLTPTTMELGGN 256 L + G G + GA LV + V+ ++FTGS I + A R P E GG Sbjct: 744 LLFLPGRGQTTGAQLVADARVSGVVFTGSTQVATIIHRTLAQRSMAERRDIPLIAETGGQ 803 Query: 257 DAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAKRLYVPDALHDQIVAELKAIIAATPMG 316 +A IV A + + + AF + GQ C+ + L + + ++ + L G Sbjct: 804 NAMIVDSSALCEQVVRDVIASAFDSAGQRCSALRVLCLQTDIAEKTLNMLHGAFEELQTG 863 Query: 317 DGLQPGMAMGPVQNPMQLKKVAALVDSARQEGATIVCGGVLPEGPGNFYPLTLVTDIRDG 376 Q +GPV + + + A ++ A + + + G + + +I D Sbjct: 864 RPDQLATDVGPVIDAEAQQHLRAYIEQAGRRAKNMKQLALPSTGTQGTFVAPCIIEI-DR 922 Query: 377 ARLVDEEQFGPVLPIIRYSTLD--EAIANANRLDVGLGASVWSRDAQRAAQVATRLQAGT 434 + E FGPVL ++RY D + + + N GL V SR + + + G Sbjct: 923 MSDLQREVFGPVLHVLRYRRDDLPQLVRDINATGFGLTLGVHSRIDETINYIVDHARVGN 982 Query: 435 VWVNQH--GMVHPMVPFGGNKRSGWG 458 ++VN++ G V + PFGG SG G Sbjct: 983 IYVNRNIIGAVVGVQPFGGEGLSGTG 1008 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 934,280 Number of extensions: 37493 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 3 Length of query: 479 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 394 Effective length of database: 720,272 Effective search space: 283787168 Effective search space used: 283787168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)