BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2856.p (726 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 292 4e-80 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 285 5e-78 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 267 1e-72 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 228 7e-61 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 228 8e-61 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 292 bits (747), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 209/559 (37%), Positives = 309/559 (55%), Gaps = 24/559 (4%) Query: 178 LVTPLFFQVVMDKVLV---NHAMMTLNVIAV---GLIAATLFEALLAGIRTAIFAKASSK 231 LV P +MD VL+ N + +++ + GL + + L RT I A S + Sbjct: 166 LVPPYMTLPLMDNVLIPYQNGVEIDSSLVVLYLSGLFGSAVLAWGLGWARTYILALVSER 225 Query: 232 IDVELGARLFSHLLSLPLAYFQVRRAGDSIARV-RELENIRSFLTSNAMTLVLDLVFSFI 290 I +L + HLL L L YF +R GD + R+ E + I FL+ + + D++ + Sbjct: 226 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIIM 285 Query: 291 FLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNK----SAENQSFLVETL 346 A+++ + L+L+ L +P + ++R +L + F K ++ + L +T+ Sbjct: 286 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDKLRNGFEKIDRIWSQVTNVLADTI 341 Query: 347 TGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTTTNISLLASGSVSLVSKLVGVGIMW-MG 405 G+ VKA A E ++ + +A + L S +V+L+++ +G+ ++W +G Sbjct: 342 PGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTE-IGLLVVWALG 400 Query: 406 ALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEV-- 463 QV ++VG L AF + + ++++ + Q+ R+ D+LD S V Sbjct: 401 IWQVSQGLITVGVLTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPE 460 Query: 464 AGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKL 523 A L V G I + + FRY A VIR L L IQPGE+IG+VG SGSGKSTL L Sbjct: 461 ATNPVHLTNVQGKITIKNIGFRYGNRA--VIRGLDLDIQPGEMIGLVGHSGSGKSTLVNL 518 Query: 524 VQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEE 583 + R Y G I VDG D+ I R+ IG+VLQE LF +I DNIA P A EE Sbjct: 519 ICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREE 578 Query: 584 VIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATS 643 +IAAA+ A AH+FI LP GYD++VGE+G LSGG+RQRI+IARAL+ +P ILI DEATS Sbjct: 579 IIAAARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATS 638 Query: 644 ALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLR 703 ++D +E+ IQ + + GRT + IAHRL+ +R ADRI+VM+RG +VE G H+ELL R Sbjct: 639 SVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELL-AR 697 Query: 704 GGIYAHLHALQAGQPAAAQ 722 G Y L+ QA Q A Q Sbjct: 698 EGAYYKLY--QAQQRQAEQ 714 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 285 bits (730), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 196/586 (33%), Positives = 322/586 (54%), Gaps = 23/586 (3%) Query: 152 FIPAVVKYRKVLGEVLLISLVLQIIGLVTPLFFQVVMDKVLVN----HAMMTLNV-IAVG 206 IP + Y+ + LL + + + PL + ++D + ++ HA++ L V I Sbjct: 46 LIPYLWTYKWRVALALLFLIAAKFANVGVPLVLKRLIDGLTIDPASPHALLVLPVGILFA 105 Query: 207 LIAATLFEALLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGD---SIAR 263 A L L +R FAK + + + ++F HL +L L + R+ G I R Sbjct: 106 YGALRLSTTLFTELREYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIER 165 Query: 264 -VRELENIRSF-LTSNAMTLV-LDLVFSFIFLAVMLWYSVPLSLIVLASIPVYLLLSLIF 320 R + ++ S+ L S TLV + LV ++ L +W+S+ ++ + L S + ++ + Sbjct: 166 GTRGISSLVSYTLFSILPTLVEITLVLGYLVLHYDIWFSI-ITAVALVSYIAFTVVVTEW 224 Query: 321 TPMLRSRLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTT- 379 R +ND + A ++ +++L +TVK E + K++D+ L Y A + + Sbjct: 225 RTHFRRTMND-LDSKANTKA--IDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQ 281 Query: 380 TNISLLASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQL 439 T++S+L +G S+++ V + I+W V+ +++G+LV N Q+ P+ L + Sbjct: 282 TSLSVLNTGQSSIIAVAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVI 340 Query: 440 WNDFQQVGISMSRLADVLDARSEVAGQ-RTRLPRVSGA-IAFERVNFRYRPEAPEVIRAL 497 + + +Q M RL +LD E+A + T+ V GA + F V F Y + +++ + Sbjct: 341 YREIKQSLADMERLFSLLDQHREIADKPNTQALVVQGAEVKFSHVGFSYEAKR-QILFDV 399 Query: 498 SLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVV 557 I G +VG SGSGKSTL++L+ R Y G I +DGQD+ + ASLR IG+V Sbjct: 400 DFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIV 459 Query: 558 LQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSG 617 Q+ LF+ +I NIA P A ++++AAAK A HDFI LP+GY T+VGE+G LSG Sbjct: 460 PQDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSG 519 Query: 618 GQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVR 677 G++QR+AIAR L+ +P ILIFDEATSALD ++E+ IQ +++I RT ++IAHRL+ + Sbjct: 520 GEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLSTIV 579 Query: 678 EADRILVMERGNVVESGRHEELLRLRGG---IYAHLHALQAGQPAA 720 +A +ILV++ G +VE G H +LL G ++A A Q PA+ Sbjct: 580 DAAQILVLDHGRIVERGTHAQLLAADGAYAQMWARQQARQDESPAS 625 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 267 bits (683), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 187/535 (34%), Positives = 297/535 (55%), Gaps = 18/535 (3%) Query: 195 HAMMTLNVIAVGLIAATLFEALLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQV 254 H ++N + L AL R + + ++ ++ ++SH+++ +F+ Sbjct: 50 HDTGSINTYFLALFGVACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFET 109 Query: 255 RRAGDSIARVRELENIRSFLTSNAMTLVLDLVFSFIFLAVMLWY-SVPLSLIVLASIPVY 313 ++G+ ++R+ + L ++++ L F VML+ S+ LS I+L + Sbjct: 110 TQSGEVLSRLTTDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIAT 169 Query: 314 LLLSLIFTPMLRSRLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPHWQKKWDQQLAGYV 373 +L + F +RS ++ A++ + E L M TV+A E K ++ + V Sbjct: 170 VLPIVWFGRRVRSLSRASQDRVADSSALAGEILNAMPTVQAFTHE----KIESERFSKTV 225 Query: 374 AAGLTTTNISLLASGSVSLVSKLVGVG----IMWMGALQVVDNQLSVGELVAFNMLAGQV 429 T + A +++++ L+ G ++W+GA V+D +S GEL F + + V Sbjct: 226 EDAFKTAMRRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIV 285 Query: 430 AAPILRLAQLWNDFQQVGISMSRLADVLDARSEVAGQRTRLP----RVSGA-IAFERVNF 484 A I L+++ D Q+ + RL ++L +S ++ LP R +G+ +A + V+F Sbjct: 286 AGAIGALSEVVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSF 345 Query: 485 RY--RPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDI 542 Y RP P I S+ I+ GE + +VG SG+GK++L +L+ R Y + G I +DG DI Sbjct: 346 YYPSRPLTP-AISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDI 404 Query: 543 AIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPE 602 +D +LR IG+V Q+ +FS + +NI P A EEVIA AK+A AH+FI LPE Sbjct: 405 RQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPE 464 Query: 603 GYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICA 662 GY + +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + Sbjct: 465 GYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMV 524 Query: 663 GRTVLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLRGGIYAHLHALQAGQ 717 GRT L+IAHRL V+ A RI+VME G++VE+G H L+ GG+YA L ALQ GQ Sbjct: 525 GRTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHASLVA-AGGLYASLAALQFGQ 578 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 228 bits (582), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 174/571 (30%), Positives = 285/571 (49%), Gaps = 30/571 (5%) Query: 159 YRKVLGEVLLISLVLQIIGLVTPLF---FQVVMDKVLVNHAMMTLNVIAVGLIAATLFEA 215 Y+K L V I +++ L P+F ++++DK +L ++ + +I + Sbjct: 17 YKKRLA-VAFIGMIMT--ALTEPMFPAVMRLLLDKGFGGKPTFSLWLVPLAIIGIFVLRG 73 Query: 216 LLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGDSI-ARVRELENIRSFL 274 + T SS++ L ++F +L +PL ++ G I + + E++ I + Sbjct: 74 ISTFTTTYTMTWVSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMI 133 Query: 275 TSNAMTLVLDLVFSFIFLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNK 334 T +++ D + + LA + W + L+L+ L +P+ + + + FT RL ++ Sbjct: 134 TKVYTSIIRDSLTVIVLLAFLFWLNWRLTLVALVLLPL-IAIVVRFTGKRVRRLTREYQA 192 Query: 335 -SAENQSFLVETLTGMDTVKAMA----------VEPHWQKKWDQQLAGYVAAGLTTTNIS 383 +AE + E+ +K V + + ++A +AA TT Sbjct: 193 VNAEMTQVIEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAA--TTPVTQ 250 Query: 384 LLASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDF 443 ++AS +V++V + + +Q NQ +VG V+F + AP+ +A++ Sbjct: 251 IMASCAVAIV--------IVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPL 302 Query: 444 QQVGISMSRLADVLDARSEVAGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQP 503 Q+ + + ++DA+ E +T R +G + F + F Y + ++L + P Sbjct: 303 QKGLTAAEAVFGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLP 362 Query: 504 GEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTL 563 GE I VG SG GKSTL LV Y G I +D I I SLR+QI +V Q L Sbjct: 363 GETIAFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVL 422 Query: 564 FSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRI 623 F +I NIA D ++AAA A D I LP+G +T++G+ G LSGGQRQR+ Sbjct: 423 FDDTIAANIAYGDETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRL 482 Query: 624 AIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRIL 683 AIARA+ + ILI DEATSALD ESE+ +Q + + GRT L+IAHRL+ + ADRI Sbjct: 483 AIARAIYKDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIA 542 Query: 684 VMERGNVVESGRHEELLRLRGGIYAHLHALQ 714 V+ G +VE G H+ELL + +YA+L+ LQ Sbjct: 543 VLAEGRIVELGSHQELLE-KNAVYANLYHLQ 572 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 228 bits (581), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 131/285 (45%), Positives = 177/285 (62%), Gaps = 18/285 (6%) Query: 443 FQQVGI------SMSRLADVLDARSEVAGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRA 496 F+QVG +++R V DA Q R G + F+ V F Y VI Sbjct: 325 FEQVGTVQDGINTLARAHTVTDAADAAPLQVMR-----GELKFDHVGFAY-GGTRAVIDQ 378 Query: 497 LSLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGV 556 +L I+PGE +G+VGRSG+GKST+ L+ R Y E GRI +DGQDIA + SLR Q+G+ Sbjct: 379 FNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGM 438 Query: 557 VLQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEG-----YDTLVGEQ 611 V Q+ +L RS+RDNI P A ++I AAK A AHDFI L + YD VGE+ Sbjct: 439 VTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGER 498 Query: 612 GCGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAH 671 G LSGGQRQRIAIAR ++ + IL+ DEATSALD E E IQ ++ ++ G+TV+ IAH Sbjct: 499 GVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVVAIAH 558 Query: 672 RLTAVREADRILVMERGNVVESGRHEELLRLRGGIYAHLHALQAG 716 RL+ + DR++V+++G +VE G H ELL+ + G+YA L A Q+G Sbjct: 559 RLSTIAAMDRLIVLDKGRIVEQGSHRELLQ-QNGLYARLWAHQSG 602 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,219,903 Number of extensions: 47677 Number of successful extensions: 382 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 43 Length of query: 726 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 637 Effective length of database: 707,092 Effective search space: 450417604 Effective search space used: 450417604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 132 (55.5 bits)