BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2852.p (730 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 285 7e-78 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 279 4e-76 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 252 4e-68 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 234 9e-63 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 218 7e-58 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 285 bits (728), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 201/550 (36%), Positives = 299/550 (54%), Gaps = 20/550 (3%) Query: 179 LVTPMFFQVVMDKVLV--NNAM---TTLNVIAI-GLLAATVFEAVLTAIRTAVFARTSSK 232 LV P +MD VL+ N + ++L V+ + GL + V L RT + A S + Sbjct: 166 LVPPYMTLPLMDNVLIPYQNGVEIDSSLVVLYLSGLFGSAVLAWGLGWARTYILALVSER 225 Query: 233 IDVELGARLFKHLLSLPISYFQARRAGDSIARI-RELENIRTFLTSNAMTLVLDLIFSFI 291 I +L ++HLL L + YF +R GD + RI E + I FL+ + + D++ + Sbjct: 226 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIIM 285 Query: 292 FIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK----GAENQAFLVETL 347 A++ + L+L+ L +P + ++R +L F K ++ L +T+ Sbjct: 286 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDKLRNGFEKIDRIWSQVTNVLADTI 341 Query: 348 TGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSVGLISKLVTVGIMWLGA 407 G+ VKA A E R ++ + +A + + S +V L++++ + + LG Sbjct: 342 PGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTEIGLLVVWALGI 401 Query: 408 KLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLDARSEV--A 465 V + ++VG L AF + + + ++++ + Q+ R+ D+LD S V A Sbjct: 402 WQVSQGLITVGVLTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEA 461 Query: 466 GQKTRIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLV 525 + + G I+ + FRY A VIR + L ++PGE+IG+VG SGSGKSTL L+ Sbjct: 462 TNPVHLTNVQGKITIKNIGFRYGNRA--VIRGLDLDIQPGEMIGLVGHSGSGKSTLVNLI 519 Query: 526 QRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIRDNIALADPSLPIETI 585 R Y G + VDG D+ I R+ IG+VLQE LF +I DNIA P E I Sbjct: 520 CRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEI 579 Query: 586 IAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARALIGNPGILIFDEATSA 645 IAAAR A AH+FI LP GYD++VGE G LSGG+RQRI+IARAL+ +P ILI DEATS+ Sbjct: 580 IAAARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSS 639 Query: 646 LDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPN 705 +D +ER IQ + + GRT + IAHRLS +R A RI+VM+RGQI E G H+ELL Sbjct: 640 VDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLA-RE 698 Query: 706 GIYAHLFQLQ 715 G Y L+Q Q Sbjct: 699 GAYYKLYQAQ 708 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 279 bits (713), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 185/588 (31%), Positives = 321/588 (54%), Gaps = 21/588 (3%) Query: 153 FIPSIVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAMT-TLNVIAIGLL-- 209 IP + Y+ + LL + + + P+ + ++D + ++ A L V+ +G+L Sbjct: 46 LIPYLWTYKWRVALALLFLIAAKFANVGVPLVLKRLIDGLTIDPASPHALLVLPVGILFA 105 Query: 210 --AATVFEAVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARI-R 266 A + + T +R FA+ + + + ++F+HL +L + + R+ G I R Sbjct: 106 YGALRLSTTLFTELREYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIER 165 Query: 267 ELENIRTFLTSNAMTLVLDLI-FSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPI- 324 I + ++ +++ L+ + + ++ Y + S+I ++ Y+ +++ T Sbjct: 166 GTRGISSLVSYTLFSILPTLVEITLVLGYLVLHYDIWFSIITAVALVSYIAFTVVVTEWR 225 Query: 325 --LRARLNEKFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTT-T 381 R +N+ + A +A +++L +TVK E +++D+ L Y A + + T Sbjct: 226 THFRRTMND-LDSKANTKA--IDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQT 282 Query: 382 NIGLVASGSVGLISKLVTVGIMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLW 441 ++ ++ +G +I+ VT+ I+W + V+ +++G+LV N Q+ P+ L ++ Sbjct: 283 SLSVLNTGQSSIIAVAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIY 341 Query: 442 NDFQQVGISMSRLGDVLDARSEVAGQ-KTRIPKLAGA-ISFHQVCFRYRPDAQDVIRDVS 499 + +Q M RL +LD E+A + T+ + GA + F V F Y Q ++ DV Sbjct: 342 REIKQSLADMERLFSLLDQHREIADKPNTQALVVQGAEVKFSHVGFSYEAKRQ-ILFDVD 400 Query: 500 LQVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVL 559 + G +VG SGSGKSTL++L+ R Y + G + +DGQD+ + ASLR IG+V Sbjct: 401 FTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVP 460 Query: 560 QENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGG 619 Q+ VLF+ +I NIA P + I+AAA+ A HDFI LP+GY T+VGE G LSGG Sbjct: 461 QDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGG 520 Query: 620 QRQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRD 679 ++QR+AIAR L+ +P ILIFDEATSALD ++E+ IQ +++I RT ++IAHRLS + D Sbjct: 521 EKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLSTIVD 580 Query: 680 AHRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQGDPQSQGVVPAA 727 A +I+V++ G+I E G H +LL +G YA ++ Q Q + PA+ Sbjct: 581 AAQILVLDHGRIVERGTHAQLLA-ADGAYAQMWARQQARQDES--PAS 625 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 252 bits (644), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 186/575 (32%), Positives = 307/575 (53%), Gaps = 23/575 (4%) Query: 157 IVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAMT---TLNVIAIGLLAATV 213 ++ Y+K + +V L P F+ ++D N + ++N + L Sbjct: 8 LLPYKKQFALAGIALIVAAAATLAIPYAFRQMIDLGFGANGIHDTGSINTYFLALFGVAC 67 Query: 214 FEAVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARIR-ELENIR 272 A+ TA R + + ++ ++ ++ H+++ +F+ ++G+ ++R+ + I+ Sbjct: 68 ILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRLTTDTTLIQ 127 Query: 273 TFL-TSNAMTLVLDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNE 331 T + TS +M L L+F+ + ++F S+ LS I+L + +L + F +R+ Sbjct: 128 TLIGTSISMALRNTLLFAGGLV-MLFVTSIKLSSIILVMLIATVLPIVWFGRRVRSLSRA 186 Query: 332 KFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSV 391 ++ A++ A E L M TV+A E +++ + V T + A + Sbjct: 187 SQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKT----VEDAFKTAMRRIRARSLL 242 Query: 392 GLISKLVTVG----IMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQV 447 +I+ L+ G ++WLGA V++ +S GEL F + + V+ I L+++ D Q+ Sbjct: 243 TMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIVAGAIGALSEVVGDAQRA 302 Query: 448 GISMSRLGDVLDARSEVAGQKTRIP-----KLAGAISFHQVCFRY--RPDAQDVIRDVSL 500 + RL ++L +S ++ +P +++ V F Y RP I + S+ Sbjct: 303 AGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSFYYPSRP-LTPAISNFSI 361 Query: 501 QVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQ 560 +K GE + +VG SG+GK++L +L+ R Y G + +DG DI +D +LR IG+V Q Sbjct: 362 AIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIRQLDLHALRNTIGIVPQ 421 Query: 561 ENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQ 620 + V+FS + +NI P E +IA A++A AH+FI LPEGY + +GE G LSGGQ Sbjct: 422 DTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPEGYQSFLGERGVRLSGGQ 481 Query: 621 RQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDA 680 RQRIAIARAL+ NP +L+ DEATSALD ESER++Q + GRT L+IAHRL+ V+ A Sbjct: 482 RQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQRA 541 Query: 681 HRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 HRIIVME G I E+G H L+ G+YA L LQ Sbjct: 542 HRIIVMEHGHIVETGTHASLVA-AGGLYASLAALQ 575 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 234 bits (598), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 176/546 (32%), Positives = 280/546 (51%), Gaps = 15/546 (2%) Query: 179 LVTPMF---FQVVMDKVLVNNAMTTLNVIAIGLLAATVFEAVLTAIRTAVFARTSSKIDV 235 L PMF ++++DK +L ++ + ++ V + T T SS++ Sbjct: 33 LTEPMFPAVMRLLLDKGFGGKPTFSLWLVPLAIIGIFVLRGISTFTTTYTMTWVSSRLLS 92 Query: 236 ELGARLFKHLLSLPISYFQARRAGDSI-ARIRELENIRTFLTSNAMTLVLDLIFSFIFIA 294 L ++F+ +L +P+ ++ G I + + E++ I +T +++ D + + +A Sbjct: 93 TLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSIIRDSLTVIVLLA 152 Query: 295 VMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK-GAENQAFLVETLTGMDTV 353 +FW + L+L+ L +P+ + + + FT RL ++ AE + E+ + Sbjct: 153 FLFWLNWRLTLVALVLLPL-IAIVVRFTGKRVRRLTREYQAVNAEMTQVIEESTRANQVI 211 Query: 354 KAMAVEPRWQQKWD---QQLAAYVAAGLTTTNIGLVASGSVGLISKLVTVGIMWLGAKLV 410 K +++ +L +Y +T L A+ V I V I+ + A + Sbjct: 212 KIFGGHQYENDRFEVRADKLRSYTMRMAST----LAATTPVTQIMASCAVAIVIVIALIQ 267 Query: 411 VE-NQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLDARSEVAGQKT 469 E NQ +VG V+F + +P+ +A++ Q+ + + ++DA+ E KT Sbjct: 268 SEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFGLIDAKPERTSGKT 327 Query: 470 RIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLVQRLY 529 + AG + F + F Y + D++L V PGE I VG SG GKSTL LV Y Sbjct: 328 LEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGGGKSTLVNLVPGFY 387 Query: 530 VCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIRDNIALADPSLPIETIIAAA 589 G + +D I I SLR+QI +V Q VLF +I NIA D + I+AAA Sbjct: 388 PATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAYGDETPDRARILAAA 447 Query: 590 RLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARALIGNPGILIFDEATSALDYE 649 A D I LP+G +T++G++GS LSGGQRQR+AIARA+ + ILI DEATSALD E Sbjct: 448 TAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIYKDAPILILDEATSALDSE 507 Query: 650 SERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPNGIYA 709 SER +Q + + GRT L+IAHRLS + A RI V+ G+I E G H+ELL+ N +YA Sbjct: 508 SERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRIVELGSHQELLE-KNAVYA 566 Query: 710 HLFQLQ 715 +L+ LQ Sbjct: 567 NLYHLQ 572 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 218 bits (556), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 126/283 (44%), Positives = 171/283 (60%), Gaps = 18/283 (6%) Query: 444 FQQVGI------SMSRLGDVLDARSEVAGQKTRIPKLAGAISFHQVCFRYRPDAQDVIRD 497 F+QVG +++R V DA Q R G + F V F Y + VI Sbjct: 325 FEQVGTVQDGINTLARAHTVTDAADAAPLQVMR-----GELKFDHVGFAY-GGTRAVIDQ 378 Query: 498 VSLQVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGV 557 +L ++PGE +G+VGRSG+GKST+ L+ R Y ++GR+ +DGQDIA + SLR Q+G+ Sbjct: 379 FNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGM 438 Query: 558 VLQENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEG-----YDTLVGEH 612 V Q+ L RS+RDNI P +I AA+ A AHDFI L + YD VGE Sbjct: 439 VTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGER 498 Query: 613 GSGLSGGQRQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAH 672 G LSGGQRQRIAIAR ++ + IL+ DEATSALD E E IQ ++ ++ G+TV+ IAH Sbjct: 499 GVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVVAIAH 558 Query: 673 RLSAVRDAHRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 RLS + R+IV+++G+I E G H ELL+ NG+YA L+ Q Sbjct: 559 RLSTIAAMDRLIVLDKGRIVEQGSHRELLQ-QNGLYARLWAHQ 600 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,257,935 Number of extensions: 50294 Number of successful extensions: 392 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 339 Number of HSP's successfully gapped: 43 Length of query: 730 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 641 Effective length of database: 707,092 Effective search space: 453245972 Effective search space used: 453245972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)