BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2849.p (479 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 91 2e-19 gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 86 6e-18 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 79 7e-16 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 115/451 (25%), Positives = 186/451 (41%), Gaps = 39/451 (8%) Query: 34 LYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGLVDSVVGR 93 LY +A IA + G L+ RLP R+ + + +TV +AY RGL+ + Sbjct: 3 LYETLAADIALSIQEGVLRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARERS 62 Query: 94 GTFVCGKRRPRIP------RVTEGRPNVDMSMNMPPEPESSELVALMQAGWNKVNGKLRD 147 G +V G R P + E VD+S + ESS++ ++ G + L Sbjct: 63 GYYVVGDVRKLPPEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSAFPSPLLFP 122 Query: 148 LMRYQ----------DFGGSAEDREAGALWLRRR--------GLVVEPQRLLVTPGAQCA 189 L R D + +D G LRR+ GL V+P +++T GA A Sbjct: 123 LARLAKAMASSVQQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPDEIVITNGALDA 182 Query: 190 LLAILTMLVGPGGVLCCEDVT-YPGLRALAGQLGIKLVGLPMD-NEGIDAVAFAGACAQY 247 L L + PG + E T Y L++L G++ + +P EG+D A A ++ Sbjct: 183 LNLCLIAVTRPGDAVLVESPTFYAALQSLERN-GLQAIEVPTHPREGMDLAALARVLERH 241 Query: 248 APKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYG---FLPRTAPPAIAS 304 PKA + NP +++ LV + +++ +IEDD YG F + PA A Sbjct: 242 QPKACWLMTNFQNPLGSLMPDEKKRDLVALLSQHDIPLIEDDVYGELYFGDKRPAPAKAY 301 Query: 305 LGSELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIR 364 L + + +K + G R+ + AP + A L TT+ AS ++ Sbjct: 302 DTKGLVMHCSSFSKCLAPGYRVGW-AAPGRYTRAVARHKL-TTTLAASAPAQAALATYLE 359 Query: 365 DGVADLALANIRKESMARQKIA-----ARILPEHSYASEPE-AFHLWIKLRGGWQASSFA 418 G D L +R ++A Q+ AR P + A+ P + LW++L A + Sbjct: 360 KGGYDRHLRQLR-HTLALQQTQFMEAIARYFPPGTQATRPRGGYFLWVELPHAVNALTLH 418 Query: 419 AQMRSSGIGVVASDAFAVSAAPEQAVRVCIG 449 Q S GI + F+ +R+ G Sbjct: 419 RQALSHGISIAPGPIFSAHQGFTNCIRLNYG 449 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 28/351 (7%) Query: 4 MLSTGKPSEESTMPKNSTLWVPKLKKGSG-PLYLAIANAIAEDVATGQLQPEQRLPPQRK 62 M ST KP+ ++ N+ P L + +G L I + + L+ R+P R+ Sbjct: 1 MTSTAKPNNAASA-SNTEPPRPLLSRETGGSLIAQIVQLVTARIDDKLLRTGARMPSIRQ 59 Query: 63 LAELLALDFTTVARAYTEAHRRGLVDSVVGRGTFVCGKR---RPRIPRVTEGRPNVD--- 116 ++ + TV AY GL++S G G +V + PR R R VD Sbjct: 60 FSDQHKVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRTPMLAPRAQRTNTARQPVDVVW 119 Query: 117 ----MSMNMPPEPESSELVALMQAGW---NKVNGKLRDLMR------YQDFGGSAEDREA 163 M +PP+ V L+ W + V LR + R Y + G R+ Sbjct: 120 LVRNMFRQLPPQKMPG--VGLLPNEWLDADLVANALRAVSRQNLPLQYGNPQGFLPLRQQ 177 Query: 164 GALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGI 223 L L + P + + T G AL + + PG + +D + + LG Sbjct: 178 LQLKLAELEISATPDQFVTTLGVTQALDLVARHYIQPGDTIFVDDPAWFLMFGSFAMLGA 237 Query: 224 KLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEV 283 K+VG+P +G D A A + PK N L NPT+ + S ++ +++IA Y+ Sbjct: 238 KVVGIPRLPDGPDIAQLAELAALHRPKLFVINSVLHNPTSTSLSAAKAFQVLKIAEQYDF 297 Query: 284 AIIEDDAYGFLP--RTAPPA--IASLGS-ELTFYVTGLAKSVGAGLRIAYL 329 I+EDD Y + T PA IA+L Y+ G +K++ A LR+ ++ Sbjct: 298 MIVEDDIYCDMHPGTTVQPATRIAALDQLNRVIYLGGFSKTLAANLRVGFI 348 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 15/272 (5%) Query: 112 RPNVDMSMNMPPEPESSELVALMQAGWNKV---NGKLRDLMRYQDFGGSAEDREAGALWL 168 RP++ P PE+ V M+A ++ V GK+ ++Y G A RE A L Sbjct: 34 RPDIISFAGGLPSPETFP-VEHMKAAFDTVLSQQGKIA--LQYGPSDGYAPLREWIADSL 90 Query: 169 RRRGLVVEPQRLLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGL 228 G+ + P ++L+ G+Q AL + +L+ + E +Y G + V + Sbjct: 91 SIPGVTITPDQVLMVSGSQQALDLLGKVLIEEHSKVLVETPSYLGALQAFSVYQPEFVSI 150 Query: 229 PMDNEGI--DAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAII 286 P D+ G+ + VA A + LY P NPT T S+ RR ALVE + +I Sbjct: 151 PTDDFGLLPEEVAKIADGA----RLLYALPNFQNPTGRTMSVERRFALVETCARLGLPLI 206 Query: 287 EDDAYGFLP-RTAP-PAIASLGSELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASL 344 EDD YG L R P P + ++ Y+ +K + G+R+ Y+VAP +L + Sbjct: 207 EDDPYGALSYRGEPLPKMLTMNPNGVIYLGSFSKVLTPGIRLGYVVAP-VPLVRKLEQAK 265 Query: 345 RATTVMASPITSTLATHWIRDGVADLALANIR 376 +A + S +T + I+DG + + +IR Sbjct: 266 QAADLHTSQLTQMVVYEAIKDGFLEKHIPSIR 297 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 821,703 Number of extensions: 31000 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 4 Length of query: 479 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 394 Effective length of database: 720,272 Effective search space: 283787168 Effective search space used: 283787168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)