BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2840.p
         (313 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094932|ref|YP_001100007.1| AraC family transcriptional reg...   164   4e-42

>gi|134094932|ref|YP_001100007.1| AraC family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 366

 Score =  164 bits (416), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 166/324 (51%), Gaps = 13/324 (4%)

Query: 1   MHHIGYLLTDGF---QIMGLATQSVFEYANKV-----AGEDFYALHNFSVAGGSVLSSLG 52
           + HIG ++ +G     ++G A   VF   +K+     AGE  YA+   S+ GG + SS  
Sbjct: 15  IKHIGIIVFEGVILADVIGAA--DVFGVGDKLISSVFAGETGYAISLLSLYGGVIKSSAS 72

Query: 53  MSITTTPASQADH--MDSWMICGVADPLASPASPDERSFLQRTGKSARRIAAICTGGFVL 110
           + I T P S  +    D+ +I       A+   P    +LQ+     RRI A+CTG FV+
Sbjct: 73  VEIMTLPLSSHEQHTFDTLIIASGTGNFAAYLEPGMIEWLQKAKNKVRRIGAVCTGVFVM 132

Query: 111 AEAGLLAKRRATTHWFFAREMQARFPEIQVEHDRIYIVDGPIWTSAGMTAGLDMALAMVA 170
           A AGLL  RRATTHW    ++   FP+I+VE D     D  I+T++ +    +MAL+ + 
Sbjct: 133 AAAGLLDNRRATTHWVLQDKLIHEFPQIKVERDATMTEDDGIFTASDVGMASEMALSFLE 192

Query: 171 KDLGEEVARGVAHKLVMHQHRTGGQTQHSEMLALAP-KTDRIQNALNYARKNLMRPLTVE 229
            DLG  VA+ VA  LV+ Q R    T    +    P K ++IQ A  +  +++  P+ + 
Sbjct: 193 SDLGPSVAKRVADSLVVCQRRRDHPTTVRPVRVAEPSKNNKIQQASRWFAEHMAEPINIL 252

Query: 230 ELAEEANLSPRQFSRVFSAETGLSPSKAIEGLRLEAARLMIEQSRHSLEVIARETGFRDR 289
             A   ++S R F R F  ETG +P + +  LRLEA R  + ++   ++ IAR  GF   
Sbjct: 253 SAANFVSMSERNFQRQFKRETGWTPHEFLLHLRLEAVRQQLTETDLPVDKIARRCGFLSG 312

Query: 290 RHMREVFIRGYGVAPQMMRREGRA 313
            H+ ++F +   V+P   RR  R+
Sbjct: 313 EHVSKLFRKHLSVSPCEYRRNERS 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 569,161
Number of extensions: 21510
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 231
Effective length of database: 730,157
Effective search space: 168666267
Effective search space used: 168666267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)