BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2838.p (556 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase [Herminii... 213 2e-56 gi|134096422|ref|YP_001101497.1| propionyl-CoA synthetase [Hermi... 177 9e-46 gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA liga... 97 2e-21 >gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase [Herminiimonas arsenicoxydans] Length = 660 Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 169/569 (29%), Positives = 261/569 (45%), Gaps = 50/569 (8%) Query: 29 FRGDFETG-INACVECCDRHIQG---DKIALDFVSIHGQHHPYSFAQIRSMASRVANLLK 84 F FE G +N C DRH+ DK+A+ F + G ++ ++ + AN LK Sbjct: 72 FYKWFEDGELNVSWNCLDRHLHNGNADKVAIIFEADDGNVTRITYKELHERVCKFANGLK 131 Query: 85 QQGIQPGQIVAGMLPRTPELLATVLGTLRAGAVYQPLFTAFGPKAIEHRLALSGARLIVT 144 I G V +P + + +A + R GA + +F F K++ R+ +GA ++T Sbjct: 132 SLSINKGDRVIIYMPMSIDGIAAMQACARIGATHSVVFGGFSAKSLHERIIDAGAVAVLT 191 Query: 145 ---------NVANRAKLDEIAHCPQVCTVRESSDPLRTG---------DIDFRAAVDAQS 186 N+ +A +DE T+R RTG DI V+ ++ Sbjct: 192 ADYQVRGGKNLPLKAIVDEALAMGGCDTIRNVVVYKRTGGAVDFVERRDIWLHELVEQRT 251 Query: 187 DDFAPVMRSGSDLMFMMSTSGTTGAAKGVPVPLSALQAFAVY-MRQAVGLLPQDKFWNMA 245 + AP +F++ TSG+TG KGV + +A+ M+ + P D +W A Sbjct: 252 SECAPEPVGAEHPLFILYTSGSTGKPKGVQHSSAGYLLWAMLTMKWVFDIKPNDVYWCTA 311 Query: 246 DPGWAYGLYYAIIGPLAIG-QGITFNEAAFTVQGS--YELIRRLGITSLAGAPTAYRMMM 302 D GW G Y GPLA+G I F +E++++ ++ APTA R ++ Sbjct: 312 DIGWVTGHTYVTYGPLAVGATQIVFEGVPMYPNAGRFWEMVQKHKVSIFYTAPTAIRSLI 371 Query: 303 AAGEEAAASVKGQ-----LRAVSSAGEPLNAEVVRWFASALD---VPIHDHYGQTELGMV 354 A E ++ + LR + S GEP+N E W+ + PI D + QTE G Sbjct: 372 KAAEADPSTHPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIVDTFWQTETGGH 431 Query: 355 VNNHHALQHEVVPGSAGFAMPGYRVVVLDDNLQELGANQPGELAI---------DIARSP 405 V + +VPGS +PG V+DD +L + G L I +I P Sbjct: 432 VISPLPGATPMVPGSCTLPLPGIIAAVVDDGGHDLPNGKGGLLVIKRPWPAMIRNIWNDP 491 Query: 406 LFWFSGYWKQETPAIAGGYYATGDN-VELEKNGSISFIGRSDDVITSAGYRIGPFDVESA 464 + Y+ E + G Y GD + E+ G + GR DDV+ +G+R+G ++ESA Sbjct: 492 ERFEKSYFPHE---LGGRTYLAGDGAIRNEETGYFTITGRIDDVLNISGHRMGTAEIESA 548 Query: 465 LLEHPAVADVAVIGLPDPERTEIVKAFVVLSDKFKASDE---LAEQLAQHVKRRLSAHAY 521 L+ +P VA+ AV+G PD E + AFVVL DE +A++L V + + A Sbjct: 549 LVANPMVAEAAVVGKPDETTGESICAFVVLKRVRPEGDEAKQIAKELRDWVAKEIGPIAK 608 Query: 522 PRAIEFVDALPKTPSGKLQRFVLRKMEAD 550 P+ I F D LPKT SGK+ R +LR + D Sbjct: 609 PKEIRFGDNLPKTRSGKIMRRLLRVLAKD 637 >gi|134096422|ref|YP_001101497.1| propionyl-CoA synthetase [Herminiimonas arsenicoxydans] Length = 634 Score = 177 bits (450), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 155/549 (28%), Positives = 260/549 (47%), Gaps = 54/549 (9%) Query: 40 CVECCDRHI--QGDKIALDFVSIHGQHHP-YSFAQIRSMASRVANLLKQQGIQPGQIVAG 96 C DRH+ + D+ AL +S Y+FAQ+ + +R A +++ G+ G V Sbjct: 59 CYNAVDRHLATRADQPALIAISTETDSEKVYTFAQLHAEVNRCAAMMQSLGVSQGDRVLI 118 Query: 97 MLPRTPELLATVLGTLRAGAVYQPLFTAFGPKAIEHRLALSGARLIVTNVAN-------- 148 +P E +L R GA++ +F F ++ R+ + LI++ A Sbjct: 119 YMPMVAEAAFAMLACARIGAIHSVVFGGFASNSLATRIDDATPVLILSADAGSRGCHVMP 178 Query: 149 -RAKLDEI----AHCP-QVCTVRESSDPLRT---GDIDFRAAVDAQSDDFAPVMRSGSDL 199 ++ LDE H P V V P++T DID+ + D PV+ S+ Sbjct: 179 YKSLLDEAIVLAEHKPTHVLMVNRGLAPMQTVAGRDIDYATLREKHMDAAVPVVWLESNA 238 Query: 200 -MFMMSTSGTTGAAKGVPVPLSALQAFAVYMRQAVGLL----PQDKFWNMADPGWAYGLY 254 +++ TSGTTG KGV + + +AV + ++ L+ + F+ +D GW G Sbjct: 239 PSYILYTSGTTGKPKGV---VRDVGGYAVALTTSMDLIFCGKAGETFFCTSDIGWVVGHS 295 Query: 255 YAIIGPLAIGQGITFNEAAFTVQGS---YELIRRLGITSLAGAPTAYRMMMAAGEEAAAS 311 Y I GPL G E + + ++ + +T ++ APTA R++ E Sbjct: 296 YIIYGPLLAGMATVLYEGLPIRPDASIWWSIVEKYKVTRMSSAPTAIRVLKKQPLELLKK 355 Query: 312 VK-GQLRAVSSAGEPLNAEVVRWFASALDVPIHDHYGQTELGM-VVNNHHALQHE-VVPG 368 L+A+ AGEPL+ W + L+VP+ D+Y QTE G +++ + + G Sbjct: 356 HDLSSLKALYLAGEPLDQTTSEWISGVLNVPVIDNYWQTETGWPIISIAKGVGDKPTRSG 415 Query: 369 SAGFAMPGYRVVVLDD-NLQELGANQPGELAIDIARSP-----LF-----WFSGYWKQET 417 S G + GY+ ++++ + +E AN+ G + I+ P L+ + S YW+ Sbjct: 416 SPGLPLYGYKTKIINEISGEECAANEKGVVIIEGPLPPGCLQTLYGDDQRFVSTYWRN-- 473 Query: 418 PAIAGGYYATGDNVELEKNGSISFIGRSDDVITSAGYRIGPFDVESALLEHPAVADVAVI 477 Y+T D + +G +GR+DDVI AG+R+G ++E ++ H V++VAV+ Sbjct: 474 --FKREAYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHGNVSEVAVV 531 Query: 478 GLPDPERTEIVKAFVVLSD-KFKASDELAEQLAQH----VKRRLSAHAYPRAIEFVDALP 532 G+ +P + + AFV+L + AS E A++L V +RL + P + FV ALP Sbjct: 532 GVENPIKGQCAVAFVILKNAALAASPEEAKKLEAEIMKVVDKRLGSIGRPSHVYFVSALP 591 Query: 533 KTPSGKLQR 541 KT SGKL R Sbjct: 592 KTRSGKLLR 600 >gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase [Herminiimonas arsenicoxydans] Length = 560 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 13/208 (6%) Query: 342 IHDHYGQTELGMVVNNHHALQHEVVPGSAGFAMPGYRVVVLDDNLQELGANQPGELAIDI 401 I + YG +E V ++ E G+ G +P V++LD N E+ GE+AI Sbjct: 356 IIEGYGLSETSPVATSNPVETTEF-SGTIGLPVPSTEVMILDSNDNEVALGLSGEIAI-- 412 Query: 402 ARSPLFWFSGYWKQ--ETP--AIAGGYYATGDNVELEKNGSISFIGRSDDVITSAGYRIG 457 R P +GYW ET A G++ TGD ++ G + R D+I +G+ + Sbjct: 413 -RGPQV-MAGYWNNPAETAQAMTADGFFKTGDIGVMDARGYTRIVDRKKDMILVSGFNVY 470 Query: 458 PFDVESALLEHPAVADVAVIGLPDPERTEIVKAFVVLSDKFKASDELAEQLAQHVKRRLS 517 P ++E+ + HP V + A IG+PD E VK FVV D AE L K + + Sbjct: 471 PSEIENVVAGHPGVLECACIGVPDEHTGEAVKLFVVRRDPALT----AEALMAFCKEQFT 526 Query: 518 AHAYPRAIEFVDALPKTPSGKLQRFVLR 545 + P+ IEF LPK+ GK+ R LR Sbjct: 527 GYKKPKMIEFRTELPKSNVGKILRRELR 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,084,961 Number of extensions: 46325 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 3 Length of query: 556 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 470 Effective length of database: 716,977 Effective search space: 336979190 Effective search space used: 336979190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)