BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2837.p (254 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 94 5e-21 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 89 1e-19 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 89 3e-19 gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 86 2e-18 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 84 1e-17 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 14/249 (5%) Query: 7 VYVVTGAASGLGAATAEQLIRAGAQVVLADVNPVAGEKMQATLGAHARFVLTDVTSEA-S 65 V +VTGA+ G+G A A+ L + G +V+ + + L + V+ DV A S Sbjct: 10 VALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDVNDAARS 69 Query: 66 AQEVFEVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFNMARLAA 125 + E+ G V LVN AGI ++L + DS + A N+ VG + A L Sbjct: 70 VALIDEIQKEFGTVTILVNNAGITQ-DQLAMRMKDEEWDSVI-ATNLTSVGRLSRAVLRG 127 Query: 126 QHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELARHGIRV 185 + + G IIN S+ G GQ+ YAA+K GV M+ +ARE+ I V Sbjct: 128 MM--------KAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITV 179 Query: 186 MTIAPGIIETPMMLGMSEEVRESLSRNVPFPPRLGKPSEFASLVMYIL--ENRYMNGEVI 243 +APG I+T M +SE+ +L + VP RLG P + A+ V ++ + Y+ G + Sbjct: 180 NCVAPGFIDTDMTKTLSEQQISALLQQVPL-GRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 244 RMDGALRMS 252 ++G + M+ Sbjct: 239 HVNGGMYMN 247 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 23/253 (9%) Query: 9 VVTGAASGLGAATAEQLIRAGAQVV--LADVNPVAGEKMQATL---GAHARFVLTDVTSE 63 +VTG GLG A +L G QVV + N AGE + AT+ G R DV+ Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWL-ATMKASGYDFRAYPCDVSDY 64 Query: 64 ASAQEVFE-VAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFNMAR 122 SAQ+ + +G + LVN AGI + K D+ M NL FNM + Sbjct: 65 DSAQQCVALIKKEIGEIDVLVNNAGITR-DMTFKKMEKTDWDAVM---GTNLDSVFNMTK 120 Query: 123 LAAQHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELARHG 182 + E G IIN +S+ A +G GQ Y+A+K G+ T +A E+AR Sbjct: 121 PVCDGM------VERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKA 174 Query: 183 IRVMTIAPGIIETPMMLGMSEEVRESLSRNVPFPP--RLGKPSEFASLVMYILENR--YM 238 + V TI+PG I T M+ + ++V + ++ VP P RLGKP E A LV Y+ + ++ Sbjct: 175 VTVNTISPGYIGTKMVTAIPQDVLD--TKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFV 232 Query: 239 NGEVIRMDGALRM 251 G I ++G M Sbjct: 233 TGANIAINGGQHM 245 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 117/249 (46%), Gaps = 19/249 (7%) Query: 9 VVTGAASGLGAATAEQLIRAGAQVVLADVNPVAGEKMQATLGAHARFVLTDVTSEASAQE 68 +V+G GLGAA A L AG V + + A + DV+ A QE Sbjct: 6 LVSGGTRGLGAAIAIYLRSAGYAVAVT-YHHNADTAAEFRKNTSIPVFCWDVSDYAQCQE 64 Query: 69 -VFEVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLD--SFMRALNINLVGSFNMARLAA 125 + +V +GP+ LVN AGI L H + ++ +N NL FNM+R Sbjct: 65 GIRQVELDVGPIDILVNNAGITRDAVL------HHMTPGQWIEVINTNLGSVFNMSRNVI 118 Query: 126 QHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELARHGIRV 185 + + E G IIN +S+ GQ+GQ YAA+K G+ T +A E AR I V Sbjct: 119 EGMR------ERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITV 172 Query: 186 MTIAPGIIETPMMLGMSEEVRESLSRNVPFPPRLGKPSEFASLVMYILENR--YMNGEVI 243 IAPG +T M+ + +EV E + +P LG S+ A LV+++ +N ++ G Sbjct: 173 NAIAPGYCDTDMVSAIPQEVLEKIVTGIPV-GHLGTGSDIARLVVFLADNASGFITGATF 231 Query: 244 RMDGALRMS 252 ++G M+ Sbjct: 232 DVNGGQFMA 240 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 16/254 (6%) Query: 3 IKQGVYVVTGAASGLGAATAEQLIRAGAQVVLADV-NPVAGEKMQATL---GAHARFVLT 58 + + V +VTG + G+GA A+ G V ++ + N A + + + G A V Sbjct: 1 MSKKVMIVTGGSRGIGAEIAKLGAIDGYAVCISYLHNKTAADAIVDLIRLTGGTAMAVAA 60 Query: 59 DVTSEASAQEVFE-VAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGS 117 D+ EA +FE V +GP+ LVN AGI + + + R+ R N+VGS Sbjct: 61 DMAVEADILRMFETVDRELGPLTALVNNAGILEQQMRVDQMDAARM---QRIFTTNIVGS 117 Query: 118 FNMARLAAQHISAGQADTEGERGVIINTASIAAFEGQMGQ-VAYAASKGGVVSMTLPMAR 176 F AR A + +S G G I+N +S+AA G G+ V YAASKG + ++T+ +A+ Sbjct: 118 FLCAREAVRRMSTLHG---GAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAK 174 Query: 177 ELARHGIRVMTIAPGIIETPMMLGMSEEVR-ESLSRNVPFPPRLGKPSEFASLVMYILEN 235 E+A GIRV + PG+I T + E R + + NVP R G+ +E A V+++L + Sbjct: 175 EVATEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKGNVPM-QRGGEANEVAQAVLWLLSD 233 Query: 236 R--YMNGEVIRMDG 247 + Y G ++ + G Sbjct: 234 KASYTTGTLLDVTG 247 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 17/203 (8%) Query: 50 GAHARFVLTDVTSEASAQEVFEVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRA 109 G A + D+T + + E GPV LVN AGI G + Sbjct: 50 GGSAEVAVFDITDAEATKVALETLLEAGPVQVLVNNAGIHSDAVFPGMTSAQ----WHSV 105 Query: 110 LNINLVGSFNMARLAAQHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVS 169 ++++L G FN+ Q ++ T R IIN +SIAA G GQV Y+A+KG + S Sbjct: 106 IDVSLHGFFNVT----QPLTMPMIRTRWGR--IINVSSIAAVTGNRGQVNYSAAKGALHS 159 Query: 170 MTLPMARELARHGIRVMTIAPGIIETPMMLGMSEEVRESLS-RNVPFPPRLGKPSEFASL 228 T +A ELA GI V +APGII T GM EE + + +N+ R GKP E A L Sbjct: 160 ATKSLALELASRGITVNAVAPGIIAT----GMIEEAFDDKAIQNIVPMKRAGKPEEVADL 215 Query: 229 VMYILENR--YMNGEVIRMDGAL 249 + ++ Y++G++I ++G + Sbjct: 216 IGFLASPNAAYISGQIISINGGM 238 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 437,962 Number of extensions: 17307 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 10 Length of query: 254 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 174 Effective length of database: 736,747 Effective search space: 128193978 Effective search space used: 128193978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)