BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2835.p (384 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 131 5e-32 gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 128 5e-31 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 80 2e-16 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 131 bits (330), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 171/380 (45%), Gaps = 41/380 (10%) Query: 40 EALKELAALGAMGMCVPEQWGGAGMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITE 99 EA K A G G+ P +GG G+ M +E + A + + + + A Sbjct: 79 EAFKAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAAN-LSFALCPLLTDGAIEALM 137 Query: 100 KYGSPAQKEQWLKPLARGEMLGCFCLTEPHTGSDAAAIRTRA--ERDGEYFILNGTKQFI 157 GS AQKE +L G+ G LTEP GSD A +R+RA + DG Y I +GTK FI Sbjct: 138 TAGSEAQKETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSRAVPQGDGTYKI-SGTKIFI 196 Query: 158 TSGKHAG----VAIVFAVT-DRSAGKKGISCFLVPR---DTAGFVVGRS-------EEKM 202 T G+H V +V A T D G KGIS F+VP+ + G + R+ E K+ Sbjct: 197 TYGEHDMAENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADGSLGARNDAYCVSIEHKL 256 Query: 203 GQHASDTVQIILENCRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMARAAFEAAV 262 G AS T + + L+G+E G + A R + Q + +A A++ AV Sbjct: 257 GIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFAVGIQGIAVAERAYQKAV 316 Query: 263 SYARQR--------ESFGVPIIDHQAVNFRLADMNTLLDAARLMVWRAAQLKD------- 307 SYA+ R + V II V L M ++AAR + + A D Sbjct: 317 SYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAAAFDIAHHHAD 376 Query: 308 ----QGRPCLKE--ASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQI 361 E + K +A+E + +AS +QIHGG+G+ + + YRD RI I Sbjct: 377 AEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTI 436 Query: 362 YEGANDIQ-RLVIGRAIASD 380 YEG IQ ++GR A D Sbjct: 437 YEGTTAIQANDLVGRKTARD 456 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 128 bits (321), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 112/371 (30%), Positives = 165/371 (44%), Gaps = 49/371 (13%) Query: 54 CVPEQWGGAGMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPAQKEQWLKP 113 C PE +GG G+ M L + E+ T+ + A ++G+ QK +L Sbjct: 98 CDPE-YGGQGLP-MVLQNSFFEMLNSSNQAWTMYPGLSHGAYECLHEHGTAEQKALYLPK 155 Query: 114 LARGEMLGCFCLTEPHTGSDAAAIRTRAER--DGEYFILNGTKQFITSGKHAGVAIVFAV 171 L GE G CLTE H G+D +R++AE DG Y I G+K FI++G+H V + + Sbjct: 156 LVSGEWTGTMCLTEAHCGTDLGLLRSKAEPQADGSYKI-TGSKIFISAGEHDMVQNILHL 214 Query: 172 T-----DRSAGKKGISCFLVPR------DTAG----FVVGRSEEKMGQHASDTVQIILEN 216 D G GIS F+VP+ T G G EEKMG H + T Q+ N Sbjct: 215 VLARLPDAPQGTHGISLFIVPKFLPNADGTLGARNPIFCGALEEKMGIHGNATCQM---N 271 Query: 217 CRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMARAAFEAAVSYARQRESF----G 272 ++G+ G + A R+G+ QS+G+ A++ A+ YA+ R G Sbjct: 272 IDGATGWMIGQPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALLYAKDRLQMRSLTG 331 Query: 273 V--------PIIDHQAVNFRLADMNTLLDAAR-LMVWRAAQL------------KDQGRP 311 V PII H V L + R + A Q+ KD Sbjct: 332 VKAADKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDRELNHPDEAVRKDAADE 391 Query: 312 CLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIYEGANDIQRL 371 + K F ++ S+A+Q++GG GY +++ +E+ RD RI IYEG N IQ L Sbjct: 392 VALLTPIIKAFLTDNGWIATSEAMQVYGGHGYIAEWGMEQYVRDARINMIYEGTNTIQSL 451 Query: 372 -VIGRAIASDQ 381 ++GR I D Sbjct: 452 DLLGRKILLDN 462 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 33/284 (11%) Query: 116 RGEMLGCFCLTEPHTGSDAAAIRTRAER-----DGEYFILNGTKQFITSGKHAGVAIVFA 170 + ML +TE GSD + T A G + L G K F S +V A Sbjct: 173 KHSMLIGMGMTEKQGGSDVRSNTTVARAVHGSGRGADYALTGHKWFF-SAPMCDAHLVLA 231 Query: 171 VTDRSAGKKGISCFLVPR-----DTAGFVVGRSEEKMGQHASDTVQIILENCRVPATALL 225 T+ G+SCF VPR ++ + ++K+G ++ + ++ ++ ++ Sbjct: 232 RTE-----NGLSCFFVPRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEFQDAY---GVMV 283 Query: 226 GKEGDGYRIALSNLEAGRIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIDHQAVNFRL 285 G+EG G + R+ S G+ R A A+ +AR R +FG P+ + + L Sbjct: 284 GEEGRGIPTIIEMANHTRLDCVIGSAGLMRNALVQAIHHARHRSAFGHPLAEQPLMRNVL 343 Query: 286 ADMNTLLDAARLMVWRAAQ------------LKDQGRPCLKEASMAKMFASEAAEKIASD 333 +D+ +AA L++ R A+ L+ R L A AK + + + + + Sbjct: 344 SDLALESEAATLLMLRLARAADASRDAPDDLLERAWRRILTPA--AKFWVCKRVLEFSGE 401 Query: 334 AIQIHGGVGYTSDFPVERIYRDVRICQIYEGANDIQRLVIGRAI 377 +++ GG GY + P+ R++R+ + I+EG+ ++ L + RAI Sbjct: 402 CMEVWGGNGYIENAPMARMFREAPVNSIWEGSGNVMCLDVLRAI 445 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 689,957 Number of extensions: 27129 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 3 Length of query: 384 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 301 Effective length of database: 726,862 Effective search space: 218785462 Effective search space used: 218785462 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)