BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2829.p (504 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotra... 168 6e-43 gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas... 156 2e-39 gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas... 105 8e-24 gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenico... 75 5e-15 >gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Herminiimonas arsenicoxydans] Length = 485 Score = 168 bits (425), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 201/427 (47%), Gaps = 19/427 (4%) Query: 85 AGKLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATILGKATCEHF 144 AG L G + KD GS LE +V +DA+VV AG LGK C+ F Sbjct: 63 AGVLTGIPIAHKDIFVTRNWRSTAGSKMLENYVSPFDATVVENFNQAGMVTLGKLNCDEF 122 Query: 145 CLSGGSHTSDPAPVHNPRRQGYASGGSSSGSAALVAAGEADMAIGGDQGGSIRIPSAFCG 204 + + S V NP + GGSS GSAA +AA + D GGSIR P+A CG Sbjct: 123 AMGSSNENSYFGAVKNPWDKTAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCG 182 Query: 205 TYGMKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAGADGLDPRQYAPQVQP 264 G+K T+G V G++ +++D GPI D L+L + D D + Sbjct: 183 VTGIKPTYGRVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMVSFDERDSTSVERDKED 242 Query: 265 YTAALDRGVRGLKIGILTEGFALGNMDKRVADKVQEAIAQLEKLGASVATVSVEEHVLAG 324 +T L+ + GLKIGI E F G + V V+ A+ + EKLGA++ +S+ + L+ Sbjct: 243 FTRDLNAPLEGLKIGIPREYFGAG-LSADVEQAVRAALGEYEKLGATLVDISLPKTELSI 301 Query: 325 ALWQPIGCEGLTMQMMHGNGM--GFNWKGLYDLGLLDRHAHWRDHADDLSATLKLCMFVG 382 + I + + +G+ GF K DL + + + A+ +K + VG Sbjct: 302 PTYYVIAPAEASSNLSRFDGVRYGFRAKDYTDLSDM----YCKTRAEGFGEEVKRRILVG 357 Query: 383 QYGLTR-YQGRFYAKAQNIARRARAGYDKALADFDLLVMPTVPIIAQPL-PAAGCPLSDY 440 Y L+ Y +Y +AQ I R + +A D+++ P P +A L A P+++Y Sbjct: 358 AYVLSHGYYDAYYLQAQKIRRLIAQDFQQAFTLCDVIMGPVAPSVAWDLGDKADDPVANY 417 Query: 441 VARAFEMIGNTAPLDITGHPAMSIPCGTVEG-----LPVGLMLVGKHYAEATLYQAAAAF 495 +A F T + G P MSIPCG +G PVGL ++G ++AEA L A + Sbjct: 418 LADIF-----TLSTSLAGLPGMSIPCGFGQGEKNAKRPVGLQIIGNYFAEAKLLNVAHQY 472 Query: 496 EASMDWQ 502 + + DW Sbjct: 473 QQATDWH 479 >gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas arsenicoxydans] Length = 469 Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 198/435 (45%), Gaps = 47/435 (10%) Query: 77 KSTVKGAAAGKLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATIL 136 +S ++G G L G + +KD +A+ GV GS +E + DA V R+ AGA I+ Sbjct: 63 QSLLRGEVLGPLHGLPISVKDLIAVGGVRQTFGSRAMENNIAQVDAPSVARVKAAGACIV 122 Query: 137 GKATCEHFCLSGGSHTSDPAPVHNPRRQGYASGGSSSGSAALVAAGEADMAIGGDQGGSI 196 G +T F + NP GGSS G+AA VAAG A+G D GGSI Sbjct: 123 GISTTSEFGCKAVGDSPLTGITRNPWNIEKTPGGSSCGAAASVAAGVTPFALGTDGGGSI 182 Query: 197 RIPSAFCGTYGMKATHGLVPYTGVMPIEA--TVDHVGPITANVRDNALMLEVIAGADGLD 254 R PS+F G +G+KA VP V P A T+ HVGP+ +VRD AL+L VIAG D D Sbjct: 183 REPSSFTGLFGIKAQFARVP---VFPASATPTLAHVGPLARSVRDAALLLSVIAGHDARD 239 Query: 255 PRQYAPQVQPYTAALDRGVRGLKIGILTEGFALGNMDKRVADKVQEAIAQLEKLGASVAT 314 P A V + AA D ++G+++ + D + + A+ + E L Sbjct: 240 PFSVAEDVPDFLAACDAPIKGMRLA-WSPDLGYAKPDAEIVRITEAAVKKFEAL------ 292 Query: 315 VSVEEHVLAGALWQPIGCEGLTMQMMHGNGMGFNWKGLYDLGLLDR-HAHWRDHADDLS- 372 GCE + ++ G+ W + G+ R H+ RD + L Sbjct: 293 ----------------GCEIIELKGGIGSDPADMWLAEFYAGVGTRLHSVMRDQRELLDP 336 Query: 373 ---ATLKLCMFVGQYGLTRYQGRFYAKAQNIARRARAGYDKALADFDLLVMPTVPIIAQP 429 ATL + L Y + + + Q R FDLL+ PT P IA P Sbjct: 337 VVVATLDKAL---DQSLLSYYSKVFERYQ-----FREKMRSMFTSFDLLLTPTAP-IAAP 387 Query: 430 LPAAGCP--LSDYVARAFEMIGNTAPLDITGHPAMSIPCG-TVEGLPVGLMLVGKHYAEA 486 P +D +++ T P ++TG PA S+P G T GLPVGL LV E Sbjct: 388 NVGVDVPAQFADRNICSWQYY--TYPFNLTGQPAASLPVGFTQSGLPVGLQLVANINRET 445 Query: 487 TLYQAAAAFEASMDW 501 +++AAAAFEA W Sbjct: 446 DIFRAAAAFEAVHPW 460 >gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas arsenicoxydans] Length = 437 Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 127/432 (29%), Positives = 184/432 (42%), Gaps = 68/432 (15%) Query: 83 AAAGKLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATILGKATCE 142 A G L G + +KD + A +P GS G P DA V +AGA I+GK Sbjct: 63 APGGALHGVPIGVKDLMDTADMPTTYGSPIYAGHQPQTDAICVAACRNAGAVIMGKTVTT 122 Query: 143 HFCLSGGSHTSDPAPVHNPRRQGYASG--------GSSSGSAALVAAGEADMAIGGDQGG 194 F T P P NP R A G GSSSGSAA VA G +A G G Sbjct: 123 EFA------TFHPGPTCNPHRTHKADGTLQVHTPGGSSSGSAAAVACGMVPVAFGTQTAG 176 Query: 195 SIRIPSAFCGTYGMKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAGADGLD 254 SI P+A+CG G K T+G++P G+ + ++D VG + +V D A + ++ L Sbjct: 177 SIVRPAAYCGVVGYKPTYGMLPLAGIKSLSPSLDTVGVLARSVGDAAFFIGTLSRLP-LS 235 Query: 255 PRQYAPQVQPYTAALDRGVRGLKIGIL-TEGFALGNMDKRVADKVQEAIAQLEKLGASVA 313 P Q + L++GI T+ + + D R A ++ A++ LE GA ++ Sbjct: 236 PLPAVAQTR------------LRLGICRTQHWDRASHDARTA--LERAVSLLEAAGARLS 281 Query: 314 TVSVEEHVLAGALWQPIGCEGLTMQMMHGNGMGFNWKGLYDLGLLDRHAHWRDHADDLSA 373 VS+ P C+GL+ M MGF L + + D S Sbjct: 282 DVSL-----------PDQCKGLSEAQM--RIMGFE-------AALAFAPEAQANPDGFSN 321 Query: 374 TLKLCMFVGQYGLTRYQGRFYAKAQNIARRARAGYDKALADFDLLVMPTVPIIAQP-LPA 432 + G G Y AQ +A AR D D+L+ P+ +A L A Sbjct: 322 AFVRFIAAGNA----IDGATYFAAQELAVAARCALTGIFNDVDILLAPSTEGVAPAGLEA 377 Query: 433 AGCPLSDYVARAFEMIGNTAPLDITGHPAMSIPCGT-VEGLPVGLMLVGKHYAEATLYQA 491 G P+ + R + ++GN P + +P GT G+P+G+ L+G + +A A Sbjct: 378 TGDPIFN---RMWTLLGN---------PCVHVPLGTGAGGMPIGVTLIGPRWGDAQTLAA 425 Query: 492 AAAFEASMDWQQ 503 AA E S QQ Sbjct: 426 AALLEGSFATQQ 437 >gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenicoxydans] Length = 427 Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 86 GKLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATILGKATCEHFC 145 G L G + +KD + +P GS+ G P +AS V+ + AG ILGK F Sbjct: 60 GPLHGVPIGIKDVIDTIDLPTEYGSTIYAGHRPRREASCVSLVRRAGGVILGKTVTTEFA 119 Query: 146 LSGGSHTSDPAPVHNPRRQGYASGGSSSGSAALVAAGEADMAIGGDQGGSIRIPSAFCGT 205 L T++P HNP + GGSSSGSAA VA +A+G GSI P+++CG Sbjct: 120 LYQPGKTTNP---HNP---AHTPGGSSSGSAAAVADFHVPVAMGTQTSGSIIRPASYCGV 173 Query: 206 YGMKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAG 249 G K T G P+ A++D +G +T V D LM EV G Sbjct: 174 VGYKPTFNTFALEGTKPLAASLDTLGYLTRTVDDLTLMREVFLG 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 930,051 Number of extensions: 38359 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 4 Length of query: 504 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 418 Effective length of database: 716,977 Effective search space: 299696386 Effective search space used: 299696386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)