BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2828.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601 [...   109   2e-25

>gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  109 bits (272), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 123/268 (45%), Gaps = 14/268 (5%)

Query: 37  DVDPADYVPAPAGTTAGLLYQQHAERDASYTNGNRNPGNPLLTSDVTILRLVHYMNIGGY 96
           +V P  +  AP GT A  LY    + +  Y +G R  G+  L +  T+L   ++    G 
Sbjct: 5   EVYPGAFAVAPPGTQALSLYLYERKYEGFYIDGKRF-GDSELKAHATVLAYTNFGQTAGM 63

Query: 97  TVGPQVLLPFASLR--SGRDIKALGNE-NALGDLILAAPVWLINDPAKSTFFAVAPYLYL 153
                + LP   +R  SG      G+  N LGD+ L    W +ND       A+A  L +
Sbjct: 64  PSSWNIALPDIHVRKTSGSLPYGFGDTTNGLGDVRLGYTFWPVNDTESGRSLAIASTLQI 123

Query: 154 PTGSYSDSRALNVGENRWKFDLQAGLVQQISGPLYLDLTGDVMVYGKNNDY-GSGRGSMR 212
           P+  Y +S++LN G+NRW+  LQ G +Q++S  L  D   +V  Y  N+++ G G   M 
Sbjct: 124 PSADYDNSQSLNAGDNRWRATLQLGWIQKLSSTLTFDFVPEVSFYSPNHNFVGFG---MT 180

Query: 213 QAPLYQLQSYLRYQFSATTNASAGLSRTWGGETTVNGVDSHDQPNQLKISFGGST----- 267
           Q P Y   +YLR++F     A+ G     GG   +NG    ++  Q ++  G ST     
Sbjct: 181 QKPTYAATTYLRWRFMPIWEANVGFQANRGGAQNINGYVLDNERRQQRVFLGLSTALSKN 240

Query: 268 -FVGPKTQIMGSIGRDLSVDNGFKENFR 294
            F G +     SIG +L   +    NF 
Sbjct: 241 IFTGLRYSHDTSIGYELKTTSDLVLNFH 268


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,163
Number of extensions: 26507
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)