BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2808.p (262 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 384 e-108 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 103 7e-24 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 103 1e-23 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 84 7e-18 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 79 2e-16 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/262 (72%), Positives = 213/262 (81%), Gaps = 3/262 (1%) Query: 1 MDLGIKGKTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGA 60 MDLGIKGKTALVC +S+GLGR CA +LA EGVHVT++AR E LEA A IR + Sbjct: 1 MDLGIKGKTALVCGASRGLGRGCAEALAAEGVHVTLVARNLEVLEATAMDIRSSASGV-- 58 Query: 61 SVRTVVCDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPI 120 + V CDITT EGRA AL CP PDILVTNAGGP GDF +WTRDDWIAA+DANMLTPI Sbjct: 59 -ITIVACDITTAEGRAQALHICPQPDILVTNAGGPPTGDFHDWTRDDWIAALDANMLTPI 117 Query: 121 ELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSNGARSGLTGFVAGLARKTVAHNVT 180 ELIKATVDGM+ARGFGRI+NITSSAV+API +LGLSNGARSGLTGFVAGLARKTVA NVT Sbjct: 118 ELIKATVDGMMARGFGRIINITSSAVKAPISVLGLSNGARSGLTGFVAGLARKTVAQNVT 177 Query: 181 INNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYLCS 240 INNLLPGPFETDRL S + AA+ G++VDE+ A R+ NPA RFG EFG CA+LCS Sbjct: 178 INNLLPGPFETDRLHSIFSEAAKSGGKSVDEISAVRKLSNPARRFGTRQEFGATCAFLCS 237 Query: 241 AQAGFITGQNLLMDGGAYPGTF 262 AG+ITGQN+L+DGGAYPGTF Sbjct: 238 QHAGYITGQNILLDGGAYPGTF 259 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 103 bits (258), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 28/261 (10%) Query: 5 IKGKTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGASVRT 64 + G+ ALV +S+G+GRA A +LA++GV V G E+ A AI + +A +G + Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVI----GTATSESGAAAISEYLAESG---KG 58 Query: 65 VVCDITTPEGRALALAACPAPD-----ILVTNAGGPKPGDFREWTRDDWIAAVDANMLTP 119 VV D+ R++AL + ILV NAG + ++W + + N+ + Sbjct: 59 VVLDVNDA-ARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSV 117 Query: 120 IELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSN--GARSGLTGFVAGLARKTVAH 177 L +A + GM+ GRI+NITS V G N A++G+ G LAR+ + Sbjct: 118 GRLSRAVLRGMMKAKHGRIINITS--VVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSR 175 Query: 178 NVTINNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAY 237 N+T+N + PG +TD T T + QQ + +V P GR G P + A ++ Sbjct: 176 NITVNCVAPGFIDTDM---TKTLSEQQISALLQQV--------PLGRLGVPEDIAAAVSF 224 Query: 238 LCSAQAGFITGQNLLMDGGAY 258 L S QA +ITG L ++GG Y Sbjct: 225 LASPQASYITGTTLHVNGGMY 245 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 119/259 (45%), Gaps = 25/259 (9%) Query: 8 KTALVCASSKGLGRACALSLAREGVHV--TMLARGAEALEAAATAIRQEVAATGASVRTV 65 + ALV GLG A + LA G V T A E AT + A+G R Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLAT-----MKASGYDFRAY 57 Query: 66 VCDITTPEGRALALAACPAP----DILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPIE 121 CD++ + +A D+LV NAG + F++ + DW A + N+ + Sbjct: 58 PCDVSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFN 117 Query: 122 LIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSN--GARSGLTGFVAGLARKTVAHNV 179 + K DGM+ RG+GRI+NI+S V A G +N A++G+ GF LA + V Sbjct: 118 MTKPVCDGMVERGWGRIINISS--VNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAV 175 Query: 180 TINNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYLC 239 T+N + PG T + TA + V ++ P GR G P E AYL Sbjct: 176 TVNTISPGYIGTKMV--TAIPQDVLDTKIVPQI--------PMGRLGKPEEVAGLVAYLA 225 Query: 240 SAQAGFITGQNLLMDGGAY 258 S +A F+TG N+ ++GG + Sbjct: 226 SDEAAFVTGANIAINGGQH 244 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 84.0 bits (206), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 33/260 (12%) Query: 8 KTALVCASSKGLGRACALSLAREG--VHVTMLARGAEALEAAATAIRQEVAATGASVRTV 65 KTALV ++GLG A A+ L G V VT A E R+ S+ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAE-----FRKN-----TSIPVF 52 Query: 66 VCDITT----PEG-RALALAACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPI 120 D++ EG R + L P DILV NAG + T WI ++ N+ + Sbjct: 53 CWDVSDYAQCQEGIRQVELDVGPI-DILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVF 111 Query: 121 ELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSN--GARSGLTGFVAGLARKTVAHN 178 + + ++GM R FGRI+NI+S V +G +N A++G+ GF LA ++ N Sbjct: 112 NMSRNVIEGMRERNFGRIINISS--VNGERGQIGQANYAAAKAGIFGFTKSLALESARKN 169 Query: 179 VTINNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYL 238 +T+N + PG +TD + + EVL P G G ++ +L Sbjct: 170 ITVNAIAPGYCDTDMVSAIP-----------QEVLEKIVTGIPVGHLGTGSDIARLVVFL 218 Query: 239 CSAQAGFITGQNLLMDGGAY 258 +GFITG ++GG + Sbjct: 219 ADNASGFITGATFDVNGGQF 238 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 15/261 (5%) Query: 5 IKGKTALVCASSKGLGRACALSLAREGVHVTMLARG-AEALEAAATAIRQEVAATGASVR 63 ++GKTAL+ S+ G+G A +LA++G H+ + G A + A + Q+ G Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDY---GVQST 62 Query: 64 TVVCDITTPEGRA----LALAACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTP 119 D++ P+ A A A + DILV NAG D ++ + W A + N+ + Sbjct: 63 YHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSA 122 Query: 120 IELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSNGARSGLTGFVAGLARKTVAHNV 179 + + M + +GRI+NI S+ A+ G+ G A + V Sbjct: 123 FHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGV 182 Query: 180 TINNLLPGPFETDRLRSTATGAAQQSGRTVDE----VLADRRKLNPAGRFGDPAEFGDAC 235 T N + PG T ++ A + D+ +LA+++ P+G F P + G Sbjct: 183 TCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQ---PSGEFVTPEQLGALA 239 Query: 236 AYLCSAQAGFITGQNLLMDGG 256 +LCS A + G MDGG Sbjct: 240 VFLCSEAANQVRGAAWSMDGG 260 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 505,981 Number of extensions: 20763 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 8 Length of query: 262 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 182 Effective length of database: 736,747 Effective search space: 134087954 Effective search space used: 134087954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)