BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2806.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 275 2e-75 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 202 1e-53 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 86 3e-18 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 82 5e-17 gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin... 77 1e-15 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 275 bits (704), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/292 (46%), Positives = 195/292 (66%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLT 60 M FDLTDL LF+ E S+T AER +LSLA+ S RI+ +E LG LL R +GV+ T Sbjct: 1 MRFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEAT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 P G L+HHA++ ++Q E ++ ++ +Y G+KG++RI +NT ++TEF+PE L FLA HP Sbjct: 61 PVGKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILNFSTDRLVLATALEHPLAGT 180 VN+ LEERL+ +I+ + EGT DIGI++ V G + F DRL L A +HPL+ Sbjct: 121 NVNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVR 180 Query: 181 GSIAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIETNVGIG 240 SI F +TL+Y+ IGL EGS L +L+ ++ G+R K R+++RSF+A+CRMIE NVGIG Sbjct: 181 SSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIERNVGIG 240 Query: 241 IVPRSAALRHQQTMQLAVVELSDPWSVRERSMVVQNMETLSPHARNLVEFIR 292 +VP +AA R +++M + V + D WS R+ + Q+ L HA+ L+E IR Sbjct: 241 VVPEAAANRLKKSMDIHTVSILDSWSSRKLIICAQSYSDLPIHAQQLIEQIR 292 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 167/278 (60%), Gaps = 1/278 (0%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLTPA 62 FDL L LF+ +A S+TR A++ NL+LAA S RI +LEA LGT LLYR + GV LT A Sbjct: 6 FDLITLSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDA 65 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 G+ HA +Q VE + M Y +GI+G +RI+ANT+A+T+F+P+ L F+ H V Sbjct: 66 GNACFQHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGV 125 Query: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILNFSTDRLVLATALEHPLAGTGS 182 + +EER + D++ GI+E DIGI A P +G+ + + +L L HPLA Sbjct: 126 RIDIEERNSGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQ 185 Query: 183 IAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIETNVGIGIV 242 ++ D L+Y+ + L E ++L L+ S + LKLR QVRSF+A+CRM++ VGIG+V Sbjct: 186 VSLSDALDYDFVSLAEATSLTERLHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVGIGVV 245 Query: 243 PRSAALRHQQTMQLAVVELSDPWSVRERSMVVQNMETL 280 P +++ L + + D W+ R + V+++ L Sbjct: 246 P-FLTQAEARSLGLHFLRVDDAWAERTLLLAVRDVRAL 282 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 6/253 (2%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLT 60 M +L LR F+ +AE R+A R++++ S I+ LEA LG +L R S+ V LT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL AQ +QQ L M++ +G G + + +TA +P L +F +P Sbjct: 61 PAGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGDG---LQILNFSTDRLVLATALE-HP 176 V + L E L + +G D+G++ P+ L L ++ L+LA Sbjct: 121 GVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKA 180 Query: 177 LAGTGSIAFLDTLEYEHIGLHE--GSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIE 234 L G S+A E I H + + G + + + + ++ Sbjct: 181 LKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVS 240 Query: 235 TNVGIGIVPRSAA 247 +GI +VP+S + Sbjct: 241 AGMGIALVPQSVS 253 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 81.6 bits (200), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 12/251 (4%) Query: 5 LTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLTPAGH 64 LT+L+ + +A +AE +++ S IK+LE LG L R + +TP G Sbjct: 3 LTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGV 62 Query: 65 TLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQVNV 124 ++ A+ ++Q +K +Q + + G R+ T +P ++ + R PQ+ + Sbjct: 63 QIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQMPL 122 Query: 125 ALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILNFSTDRLVLATALEHPLAGTGSIA 184 L+E +L +++G D IVA P+ GL + + V+A HP A S+ Sbjct: 123 VLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSSVT 182 Query: 185 FLDTLEYEHIGLHEGSTLHHFLNRIV---------SEHGQRLKLRIQVRSFEAMCRMIET 235 D L+ E + L H F ++++ S G + + S E + M+ + Sbjct: 183 -TDNLKSETMLLLGNG--HCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVAS 239 Query: 236 NVGIGIVPRSA 246 +GI ++P+++ Sbjct: 240 GIGITVLPQAS 250 >gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Herminiimonas arsenicoxydans] Length = 306 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 7/249 (2%) Query: 2 LFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLTP 61 + +L L+ I + E +L R+A +N++ +A S+++K+LE GT+L R+S V+ TP Sbjct: 4 ILELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVRFTP 63 Query: 62 AGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQ 121 AG LL A + QV + D+ + G+ G +RI +++ + F R P+ Sbjct: 64 AGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPE 123 Query: 122 VNVALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILNFSTDRLVLATALEHPLAGTG 181 V + + D + + E AD+ IVA + + +V A +HPLA Sbjct: 124 VELDIVSGFQADPVGLLYEHRADVAIVAEIDPDETVDYHALFRFEIVALVAHDHPLADKE 183 Query: 182 SIAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFE---AMCRMIETNVG 238 + D + I + + +++ G ++++ R+ E AM +++ + G Sbjct: 184 FLVAEDFIGDTLITYPVPDDMLDVVRQVLKPAG----IKVERRTTELTVAMLQLVASRRG 239 Query: 239 IGIVPRSAA 247 I +P AA Sbjct: 240 IATLPVWAA 248 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 539,950 Number of extensions: 21477 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 17 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)