BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2804.p
         (388 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase...    85   6e-18
gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini...    69   3e-13

>gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 596

 Score = 84.7 bits (208), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 159/382 (41%), Gaps = 50/382 (13%)

Query: 26  PEYWRK--IDEARGYPEQFVDALTKAGWLAALIPQEYGGSGLGLTEASVIMEEINRTGGN 83
           P  W+   +    G+ E F  A   AGW     P  +GG GL    A+  ME +N    +
Sbjct: 63  PSAWKDGAVTTTPGFKEAF-KAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAANLS 121

Query: 84  SGACHGQMYNMGT---LLRHGSPQQKQHYLPRIASGELRLQSMGVTEPTTGTDTTRIKTV 140
              C   +   G    L+  GS  QK+ +LP   +G+    +M +TEP  G+D   +++ 
Sbjct: 122 FALC--PLLTDGAIEALMTAGSEAQKETFLPNFIAGKWT-GTMNLTEPQAGSDLAMVRSR 178

Query: 141 ALRRGD-RYVVNGQKVWISRVQH----SDLMILLARTTPLDQVKKKSEGMSIFIVD--LK 193
           A+ +GD  Y ++G K++I+  +H    + + ++LART       +  +G+S+F+V   L 
Sbjct: 179 AVPQGDGTYKISGTKIFITYGEHDMAENIVHLVLARTP---DAPEGVKGISLFVVPKFLV 235

Query: 194 QAIGRGLEVRPIANMVNHE---------TNELFFDHLEIPAENLIGEEGQGFRYILDGLN 244
            A G  L  R  A  V+ E         T  L F         L+GEE +G   +   +N
Sbjct: 236 NADGS-LGARNDAYCVSIEHKLGIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMN 294

Query: 245 AERTLIAAECIGDGYWFIDKAAQYAKHRVVFDRPIGMNQGVQF--------PIAEAYIEL 296
           A R  +  + I        KA  YAK RV      G    V           +     ++
Sbjct: 295 AARFAVGIQGIAVAERAYQKAVSYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQI 354

Query: 297 EAANLMRYRACALFD-AGQACGAQANMA------------KYLAAKASWEAANVCLQTHG 343
           EAA  + Y   A FD A     A+   +            K  A + S + A+  LQ HG
Sbjct: 355 EAARALAYVGAAAFDIAHHHADAEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHG 414

Query: 344 GFGFACEYDVERKFRETRLYQV 365
           G GF  E    + +R+ R+  +
Sbjct: 415 GMGFIEETGAAQYYRDARILTI 436


>gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 596

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 148/358 (41%), Gaps = 48/358 (13%)

Query: 49  AGWLAALIPQEYGGSGLGLTEASVIMEEINRTGGN----SGACHGQMYNMGTLLRHGSPQ 104
           AGW +     EYGG GL +   +   E +N +        G  HG       L  HG+ +
Sbjct: 91  AGWPSLSCDPEYGGQGLPMVLQNSFFEMLNSSNQAWTMYPGLSHGAYE---CLHEHGTAE 147

Query: 105 QKQHYLPRIASGELRLQSMGVTEPTTGTDTTRIKTVALRRGD-RYVVNGQKVWISRVQH- 162
           QK  YLP++ SGE    +M +TE   GTD   +++ A  + D  Y + G K++IS  +H 
Sbjct: 148 QKALYLPKLVSGEWT-GTMCLTEAHCGTDLGLLRSKAEPQADGSYKITGSKIFISAGEHD 206

Query: 163 ---SDLMILLARTTPLDQVKKKSEGMSIFIVD--LKQAIGRGLEVRPIANMVNHET---- 213
              + L ++LAR   L    + + G+S+FIV   L  A G      PI      E     
Sbjct: 207 MVQNILHLVLAR---LPDAPQGTHGISLFIVPKFLPNADGTLGARNPIFCGALEEKMGIH 263

Query: 214 -NELFFDHLEIPAENLIGEEGQGFRYILDGLNAERTLIAAECIGDGYWFIDKAAQYAKHR 272
            N     +++     +IG+  +G   +   +NA R  +  + +G        A  YAK R
Sbjct: 264 GNATCQMNIDGATGWMIGQPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALLYAKDR 323

Query: 273 VVF---------DR---PIGMNQGVQFPIAEA------------YIELEAANLMRYRACA 308
           +           D+   PI ++  V+  +  A            Y+ L+    + +   A
Sbjct: 324 LQMRSLTGVKAADKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDRELNHPDEA 383

Query: 309 L-FDAGQACGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRETRLYQV 365
           +  DA         + K       W A +  +Q +GG G+  E+ +E+  R+ R+  +
Sbjct: 384 VRKDAADEVALLTPIIKAFLTDNGWIATSEAMQVYGGHGYIAEWGMEQYVRDARINMI 441


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 752,771
Number of extensions: 30937
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 305
Effective length of database: 726,862
Effective search space: 221692910
Effective search space used: 221692910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)