BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2803.p (396 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095888|ref|YP_001100963.1| hypothetical protein HEAR2722 [... 198 5e-52 gi|134094280|ref|YP_001099355.1| putative Formyl-CoA transferase... 186 2e-48 gi|134093633|ref|YP_001098708.1| formyl-coenzyme A transferase [... 160 1e-40 gi|134093632|ref|YP_001098707.1| formyl-coenzyme A transferase [... 152 3e-38 >gi|134095888|ref|YP_001100963.1| hypothetical protein HEAR2722 [Herminiimonas arsenicoxydans] Length = 400 Score = 198 bits (503), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 204/397 (51%), Gaps = 8/397 (2%) Query: 6 GPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARVD-GLSSHFVW 64 GPL G+ VI L H ++ P C LAD+GA VIK+E+ GD +R + + G S+ F+ Sbjct: 3 GPLNGMRVIELAHIMSGPICGMMLADMGADVIKVEKTPDGDDSRRFSPMLPCGESASFMI 62 Query: 65 TNRSKESLTLNLKDEAGKRIIDQLLQQAD--VLVQNLAPGAAAALGLSAQVLHERHPRLI 122 NR+K + LNLK E G+ ++ +LL AD V+++N G GL + L +P LI Sbjct: 63 VNRNKRGIGLNLKTEGGREVLRRLLADADADVVIENYRAGTMEKFGLGYEELKLLNPGLI 122 Query: 123 VCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVA-KAGCSIADIAAGMYAYSNI 181 C ISG+G GPY DK +DL+ Q +G +S+TG KAG +ADI AG+ A I Sbjct: 123 YCSISGFGRTGPYADKGGFDLIAQGMSGMMSMTGEEGRAPIKAGSPVADINAGILAALGI 182 Query: 182 LAALIQRGRDGRGSHIDLSMLEALAEWMSFPLYYAYQGASAPQRSGAEHATIYPYGPFTA 241 AA + R G G +D S+ EA + M +P + + + G+ ++T PY F + Sbjct: 183 AAAYANKLRTGLGQVVDTSLFEAGLQQMYWPAANYFADGTILPKMGSANSTSAPYQVFAS 242 Query: 242 GDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFSSNALRHEHRETLRQLILTMFADMT 301 DG + +G N+ ++ E VL+ ALA D RF +NA R +RE L QL+ T Sbjct: 243 SDG-WINIGAANQNNYERLLE-VLQMPALADDPRFRTNADRMANREALVQLLNERLVTRT 300 Query: 302 AEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWTEVDTPV-GKVAAM-LPPGANDRY 359 Q + D + V + + H Q AR E + PV G V + LP +D Sbjct: 301 TAQWLEEFDAVGLPAGPVLNVAEAMAHEQAIARDMIVETEHPVAGPVKGLGLPIRFSDDA 360 Query: 360 DYRMEAIPALGQHTEAILGQLGYDAAGITALRERGAV 396 P LG+HT +L +LGY I L+++ AV Sbjct: 361 GTSQRPAPLLGEHTFKVLLELGYGEEEILVLQQQQAV 397 >gi|134094280|ref|YP_001099355.1| putative Formyl-CoA transferase [Herminiimonas arsenicoxydans] Length = 414 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 136/415 (32%), Positives = 208/415 (50%), Gaps = 24/415 (5%) Query: 2 SHATGPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARVDGLSSH 61 + ++GPLAGI V+ L IA PFC+R LA+ GA VIKIE P GD R + DG S Sbjct: 4 TSSSGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIESPDGGDPIRQWRVLKDGTSLW 63 Query: 62 FVWTNRSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRL 121 + R+K+SLTLNLKD G++I +L +AD++++N PG L + L +P Sbjct: 64 WSVQARNKKSLTLNLKDPRGQQIAKKLALEADIIIENYRPGVLEKWSLGYEQLKAENPAT 123 Query: 122 IVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVA-KAGCSIADIAAGMYAYSN 180 I+ +SG+G+ GP +D+ + + +S G V+G D + G SI D A ++ Sbjct: 124 IMVRLSGFGQTGPLKDQPGFGAIGESMGGMRYVSGFPDRPPLRIGISIGDSVAALHGVIG 183 Query: 181 ILAALIQR----GR----------DGRGSHIDLSMLEALAEWM-SFPLYYAYQGASAPQR 225 + AL R GR G+G ID+++ EA+ M S Y Y G +R Sbjct: 184 AMMALRHRDATGGRWNGKSGAECVAGQGQMIDVALYEAVFNMMESLVPEYDYAGV-VRER 242 Query: 226 SGAEHATIYPYGPFTAGDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFSSNALRHEH 285 +G I P +T GDG+ +++ + +K + D LA+DA+ + N R Sbjct: 243 TGGALPGIVPSNTYTTGDGENIVIAGNGDAIFKRLMLAMGRD-DLANDAQLARNDGRVPR 301 Query: 286 RETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRW---TEVD- 341 + I A T + +A L A + ++ ++ D+ PQ AR+ + T D Sbjct: 302 TAEIDGAIQAWCATQTIDSAMAILQAADVPAGKIYSVRDMMNDPQFLARKMFEQHTFADG 361 Query: 342 TPVGKVAAMLPPGANDRYDYRMEAIPALGQHTEAILGQLGYDAAGITALRERGAV 396 TP+ K+ A+ P + + + PALG+HT+ +L LGYD AGI LR G V Sbjct: 362 TPI-KLPAITPKLSETPGETKWLG-PALGEHTDDVLKTLGYDDAGIAELRRDGVV 414 >gi|134093633|ref|YP_001098708.1| formyl-coenzyme A transferase [Herminiimonas arsenicoxydans] Length = 416 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/414 (30%), Positives = 192/414 (46%), Gaps = 28/414 (6%) Query: 8 LAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARV-DGLSSHFVWTN 66 L+G ++ H + P CT+ LA GA VIK+ER G GD RG + D S +F N Sbjct: 5 LSGYRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPDADSLYFTMLN 64 Query: 67 RSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIVCDI 126 +K S+TL+ K+ GK++++ L+++ DVLV+N APGA +G + + +HE +P+++V + Sbjct: 65 HNKRSITLDTKNPKGKQVLETLIKECDVLVENFAPGALDRMGFTWERIHELNPKMVVASV 124 Query: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVAK-AGCSIADIAAGMYAYSNILAAL 185 G+G GPY K Y+ + Q G S TG D G I D G++ ILAAL Sbjct: 125 KGFGP-GPYEHCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGILAAL 183 Query: 186 IQRGRDGRGSHI-----------------DLSMLEALAEWMSFPLYYAYQ-GASAPQ--- 224 +QR GRG + D LE +P Y G S P+ Sbjct: 184 LQRQTSGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTGVMKEYPQYPDTPFGDSVPRAGN 243 Query: 225 -RSGAEHATIYPYGPFTAGDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFSSNALRH 283 G + +I + D + + W C+V+ ++ LA D F++ ALR Sbjct: 244 ASGGGQPGSILKCKGWET-DPNAYIYFVNQGAVWDSVCKVIGKEEWLA-DPSFATPALRV 301 Query: 284 EHRETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWTEVDTP 343 H + + + T + + L++ I + +M ++ + P L EVD P Sbjct: 302 NHMKAIFAAVEEWTKTKTKFEAMDILNKFDIPCGPILSMKEIAEEPSLRETGTIVEVDHP 361 Query: 344 V-GKVAAMLPPGANDRYDYRMEAIPALGQHTEAILGQLGYDAAGITALRERGAV 396 V GK + P + P LG+HTE +LGQLGY I LR+ G + Sbjct: 362 VRGKYLTVGNPIKLSDSPTDVTRSPLLGEHTEEVLGQLGYSEEQIADLRKEGVI 415 >gi|134093632|ref|YP_001098707.1| formyl-coenzyme A transferase [Herminiimonas arsenicoxydans] Length = 419 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 123/421 (29%), Positives = 193/421 (45%), Gaps = 34/421 (8%) Query: 5 TGPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARV-DGLSSHFV 63 T PLAGI +I H A P CT+ LA GA VIK+ERPG GD R + D + +F Sbjct: 4 TLPLAGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRNQLRDIPDADALYFT 63 Query: 64 WTNRSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIV 123 N +K SLTL+ K AGK +++++++++DV+V+N PGA +G S + E +P +I+ Sbjct: 64 MLNSNKRSLTLDTKTPAGKEVLERMIKESDVMVENFGPGALDRMGFSWARIQELNPGMIM 123 Query: 124 CDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVAK-AGCSIADIAAGMYAYSNIL 182 + G+ E Y D K Y+ + Q G S TG D + ++ D GM+ IL Sbjct: 124 ASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGFWDGPPTVSAAALGDTNTGMHLAIGIL 183 Query: 183 AALIQRGRDGRGSHIDLSMLEALAEWMSFPLYYAYQGASAPQRSGA-EHATIYPYGPFTA 241 AL+ R + G+G + ++M +A+ L + + G + YP+G FT Sbjct: 184 TALMGRQKTGKGQKVAVAMQDAVLNLCRVKL----RDQQRLDKLGVLKEYPQYPHGTFTD 239 Query: 242 GDGKTVMLGLQNEREWKVFCE-----------VVLEDAA------------LASDARFSS 278 + G + W + C+ ++D A A+D +++ Sbjct: 240 VVPRGGNAGGGGQPGWVLKCKGWETDPNAYIYFTVQDHAWPPIAHAIGKDEWANDPAYNT 299 Query: 279 NALRHEHRETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWT 338 R + + I D T + V L + I A V +M ++ P L A Sbjct: 300 PDARQDKIFDIFATIEDWLKDKTKFEAVDILRKFDIPCAPVMSMKEIANDPSLRASGSIV 359 Query: 339 EVDTPVGKVAAMLPPGANDRY-DYRME--AIPALGQHTEAILGQLGYDAAGITALRERGA 395 EV+ G+ L G+ ++ D + E A P LG+HT+ +L LGY I AL A Sbjct: 360 EVEHK-GRGEKYLTVGSPIKFSDLKPEITASPLLGEHTDEVLASLGYSKEEIAALHTSKA 418 Query: 396 V 396 V Sbjct: 419 V 419 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 729,773 Number of extensions: 28677 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 5 Length of query: 396 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 312 Effective length of database: 723,567 Effective search space: 225752904 Effective search space used: 225752904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)