BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2802.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094987|ref|YP_001100062.1| putative lyase [Herminiimonas a...    58   5e-10

>gi|134094987|ref|YP_001100062.1| putative lyase [Herminiimonas
           arsenicoxydans]
          Length = 321

 Score = 58.2 bits (139), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 35  VIVDLEDAVAPSQKEAARAMLAHWLQ-EQAAQPRIWVRINAADTVWHQQDL---LTFSAP 90
           +  D ED  A   ++A   ++   +  E+    RI  R++   + + +QD+   L  +A 
Sbjct: 46  ITFDCEDGAALGNEQAHAQLIGALIAGEENLFGRIGARVHDVTSEFFEQDIKIILQHAAE 105

Query: 91  SLAGIVLPKA------EDAATVASVAAHLGAGCRLIALIESAAGLAAMRQIAAVPGVQRL 144
            LA +V+PK       E+A ++ +  A+  A   +  LIE+   L     IAA+P V+ L
Sbjct: 106 RLAYLVMPKVGSIADVENAISLINRHANGRANLPVHVLIETHGALKDAYAIAALPQVECL 165

Query: 145 AFGSIDAQLD---------LRMQCGPQEEELMPLRVEMVMASRLAGIAPPIDGVTTDFND 195
           +FG +D             +R         L   ++E+  A    G  P    VTT+ +D
Sbjct: 166 SFGIMDFVSSHYGAIPGSAMRSPGQFTHPLLTRAKLEIAAACHAHGKTPS-HNVTTEIHD 224

Query: 196 DALLARMVQQA-RRLGFGAKLCIHPRQVDGVRHGFMPSEQELAWAEEVMAAVRASDGGAI 254
            +++A    +A     +     IHP Q+  +   F P   E+  A  +++  +A   G I
Sbjct: 225 TSVVASDAHRAASEFAYTRMWSIHPGQIKPILKSFAPRLSEVNEAATILSQAQAVQWGPI 284

Query: 255 SFKGKMIDK 263
              GK+ DK
Sbjct: 285 QHNGKLHDK 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 502,567
Number of extensions: 18447
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)