BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2800.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-bindi...   380   e-107
gi|134094689|ref|YP_001099764.1| putative signal peptide [Hermin...    85   5e-18

>gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-binding
           periplasmic protein precursor [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 173/320 (54%), Positives = 239/320 (74%)

Query: 18  LTLPLAAKVALAQSTIVIKFSHVVANDTPKGKGAERFKELAEKATNGRVKVEVYPNSTLY 77
           L L  A  +  AQ+T VIKFSHV  +DTPKG+ A  FKEL E+++ GR++V+VYPN+ LY
Sbjct: 14  LALSTAGTIVSAQATTVIKFSHVAGSDTPKGRAALHFKELLEESSRGRIRVDVYPNNQLY 73

Query: 78  KDKEELEALQLGSVQMLAPSLAKFGPLGAKEFEVFDLPYIFPNKAVLKRVTEGPIGQGLF 137
           K+ +ELEALQLG+VQM+APSLAK    GA++FEVFDLPY+F NK  + RVTEG +G+ L 
Sbjct: 74  KESDELEALQLGAVQMVAPSLAKLAQFGAQDFEVFDLPYLFANKDAVARVTEGILGKALL 133

Query: 138 QRLESRGIKGLAYWDNGMKVMTANRPLHQVADFRALKMRIQSSKVLDEQFRALKANPQVL 197
           +RL+S+G+ GLAYWDNG K+M+AN+PL   ADF  +KMR+ SS VL+ Q RAL A PQ++
Sbjct: 134 KRLDSKGMVGLAYWDNGFKIMSANKPLKMPADFVGMKMRVHSSPVLESQMRALGAIPQIM 193

Query: 198 AFSEVYQAMQTGVVDGSENTPSNIYTQKMYEVQSNLTVSDHGYIGYAVIVNKKFWDALPA 257
             +EVY A+++GV+DG E+ P N Y +K+Y+VQS++TVS+HGY+G AVIVNKKFWD LP 
Sbjct: 194 DANEVYFALRSGVIDGLESAPLNFYARKLYDVQSHITVSNHGYLGSAVIVNKKFWDGLPF 253

Query: 258 DVRTQLEGAMKEATIYANNIAQKENDDALAAIKASGKTKVYTLSEEEKTQWRRALLPVHK 317
           D+R  ++ AM+ AT Y N +A KEN+ AL  I+ + KT +Y L+++E   W +ALLPV K
Sbjct: 254 DLRKMIDDAMQAATTYGNTLAAKENEAALELIRKTRKTTIYVLTDKESAAWHQALLPVRK 313

Query: 318 SMATRVGPELIEAIYKESEA 337
            +  R+G  ++  + KE++ 
Sbjct: 314 DLEERIGKAVVMTVAKEADG 333


>gi|134094689|ref|YP_001099764.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score = 85.1 bits (209), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 23/272 (8%)

Query: 7   RAALAACVFATLTLPLAAKVALAQSTIVIKFSHVVANDTPKGKGAE---------RFKEL 57
           ++ L+  +     +  +A    A  T +IK SH      P G GA+         +F + 
Sbjct: 8   KSTLSTVLIGAFAMGFSASSMAA--TKIIKISH----QFPGGDGADVDFRHRLAVKFAQD 61

Query: 58  AEKATNGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGAKEFEVFDLPYI 117
            EK TNG +K E+YP+++L K   +  A+Q G++ M    LA  G     E  +  +P +
Sbjct: 62  VEKRTNGELKFEIYPSASLVKPNSQFSAMQTGALDMTVLPLAYEGG-KIPETNLGLMPAL 120

Query: 118 FPNKAVLKRVTEGPIGQGLFQRLESRGIKGLAY-WDNGMKVMTANRPLHQVADFRALKMR 176
             +     R    PIG+ L   +E +G+K + + W  G  V +  + + Q +D + +K+R
Sbjct: 121 VTSYEQGLRWKTAPIGKALNDVVEGKGVKIITWVWQAG-GVASKTKSIVQPSDAKDVKIR 179

Query: 177 IQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYTQKMYEVQSNLTVS 236
              SK +D   +    +   +  SE+Y AMQTGV+D +  + +++ + ++YEV   +T +
Sbjct: 180 -GGSKEMDMMLKGAGGSITNVPSSEIYNAMQTGVLDAAVTSSTSLLSFRLYEVAKQVTTA 238

Query: 237 DHGYIGYA---VIVNKKFWDAL-PADVRTQLE 264
                 +    +++ K  +D+L PA  +  +E
Sbjct: 239 RKNTFWFMFEPLLMAKSTYDSLTPAQQKIVME 270


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 583,362
Number of extensions: 22515
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)