BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2798.p
         (348 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093906|ref|YP_001098981.1| N-acetyl-gamma-glutamyl-phospha...   289   1e-79
gi|134093525|ref|YP_001098600.1| N-acetyl-gamma-glutamyl-phospha...    68   7e-13

>gi|134093906|ref|YP_001098981.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herminiimonas arsenicoxydans]
          Length = 310

 Score =  289 bits (740), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 196/306 (64%), Gaps = 3/306 (0%)

Query: 43  PLIFIDGDQGTTGLQIHERLRGRTDLRVLTLPPAERKDARRRAEAINSADIALLCLPDAA 102
           P IFIDG  GTTGLQIH+ L    D+ ++++  ++RK    R + +N  D+A+LCLPD A
Sbjct: 4   PRIFIDGQAGTTGLQIHQLLANDGDIDIVSIDESDRKKEHVRRQLLNEVDVAILCLPDDA 63

Query: 103 AREAVALIENTKVRVIDASSAHRTSPGWVYGFPEMAPGQAEAIASAQRISNPGCYPTGAI 162
           A++AV+ I+N  VRV+DASSAHR + GWVYGFPEM P QA  IA  +R+SNPGCY TG I
Sbjct: 64  AKDAVSWIKNDSVRVLDASSAHRVASGWVYGFPEMHPEQASRIAQGRRVSNPGCYATGVI 123

Query: 163 ALLRPLVQAGLVPTDYALAIHAVSGYSGGGRAQVEQYEGPQAASAAPFVTYGLGLAHKHP 222
           ALL PL+Q GL+  D  + ++A+SGYSGGG+A +  YE P       F  YGL   HKH 
Sbjct: 124 ALLNPLIQRGLLAPDTPITVNAISGYSGGGKAMIASYETPSNMMPV-FRPYGLNFQHKHL 182

Query: 223 PEMQLHAGLSQRPIFVPSYGAFGQGIVLSIALHQRLLPAKASLERLRAALQAHYAGARHV 282
            EMQ H+GLS+ P+F+P+ G F QG+++ I L         +   L   L  HY  +  V
Sbjct: 183 GEMQQHSGLSRPPLFIPAVGTFRQGMLVQIPLPLWASRVATTPYDLHKKLSEHYENSATV 242

Query: 283 HV--LDAEQSAATAQLDPTRHNGSNDMTLGVFGNATEGHILLCAVFDNLGKGASGAAVQN 340
            V  L    +A +A ++P R N +N + + VFG+      +L A FDNLGKGASGAA+QN
Sbjct: 243 CVAPLIEGTAADSANINPERFNNTNMLEISVFGDTASEQAVLMACFDNLGKGASGAAIQN 302

Query: 341 LDLLLG 346
           L L+LG
Sbjct: 303 LRLMLG 308


>gi|134093525|ref|YP_001098600.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herminiimonas arsenicoxydans]
          Length = 345

 Score = 67.8 bits (164), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 126/308 (40%), Gaps = 48/308 (15%)

Query: 62  LRGRTDLRVLTLPPAERKDARRRAEAINSADIALLCLPDAAAREAVALIENTKVRVIDAS 121
           LRGR DL   +  P + K        +   D+     P   A      +    V+VID +
Sbjct: 49  LRGRVDLAFSS--PDKAK--------LTECDVVFFATPHGVAMAQAPELLAAGVKVIDLA 98

Query: 122 SAHRTS-----PGWVYGFPEMAPG------------QAEAIASAQRISNPGCYPTGAIAL 164
           +  R         W Y  P   P               +AI  A+ + NPGCYPT     
Sbjct: 99  ADFRLQDTAAFEKW-YKMPHSCPELLKEAAYGLVELNRDAIRKARIVGNPGCYPTTMQLG 157

Query: 165 LRPLVQAGLVPTDYALAIHAVSGYSGGGR-AQVEQYEGPQAASAAPFVTYGLGLAHKHPP 223
           L PL++A ++   + +A    SG SG GR A+V       A +   F  YG+   H+H P
Sbjct: 158 LAPLLKADVIDASHLIA-DCKSGVSGAGRKAEVSML---FAEAGDNFKAYGVS-GHRHSP 212

Query: 224 E----MQLHAGLSQRPIFVPSYGAFGQGIVLSIALHQRLLPAKASLERLRAALQAHYAGA 279
           E    +Q+  G     +F P      +G      +H  +  A+ + E   AALQA +  A
Sbjct: 213 ETVERLQILTGQKVGLLFAPHLVPMIRG------MHSTMY-ARLTKEMDNAALQALFENA 265

Query: 280 RHVH-VLDAEQSAATAQLDPTRHNGSNDMTLGVFGNATEGHILLCAVFDNLGKGASGAAV 338
                 +D     +  +   TR   SN + + +        I++  V DNL KGASG AV
Sbjct: 266 YASEPFVDVMPFGSHPETRSTR--ASNMLRIALHRPNDGDTIVILVVQDNLVKGASGQAV 323

Query: 339 QNLDLLLG 346
           Q ++L+ G
Sbjct: 324 QCMNLMFG 331


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 680,712
Number of extensions: 28370
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 265
Effective length of database: 726,862
Effective search space: 192618430
Effective search space used: 192618430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)