BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2797.p (307 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 89 4e-19 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 84 1e-17 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 70 1e-13 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 70 1e-13 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 64 7e-12 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 18/268 (6%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 ++L L+ +VA+A F AA A H+A PT+S+ I +LE+ +G L R S++ + + Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQG-LAGRVRLGASTGAIAYLLPQVLERLGQSHPG 122 G +VA+A ++L A++E+ +Q + L G RLG YLLP +++ + + P Sbjct: 61 GVQIVAQAERVLEQT-AAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQ 119 Query: 123 IDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPA--AWHAP 180 + + + + + L QL +G +D +VALP P GL V+P +P + VP W Sbjct: 120 MPLVLQENFTVKLLEQLRQGEIDAAIVALP-IPDQGLLVQPVYDEPFVVAVPKHHPWAER 178 Query: 181 RVVTPAWLAAQPLIL--NAPETRLSRLSA----EWFAAAGEHPLPRIQLNFNDAIKSLVA 234 VT L ++ ++L N R L F+ +G+ + + + I+ +VA Sbjct: 179 SSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVA 238 Query: 235 AGYGATLLP-------HEASAQGRTVPL 255 +G G T+LP H R +P Sbjct: 239 SGIGITVLPQASVPDMHTTDGMLRYIPF 266 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 8/261 (3%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 L L + + GS A A HL+ + S I +EE +G PLL+R + V + + Sbjct: 3 FDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPV 62 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGI 123 G LV AR L E+ E+ QGL G VR+ ++T ++ LP+ L +HP + Sbjct: 63 GKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNV 122 Query: 124 DVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWHAPRVV 183 ++ + S E +S L EG++DIG+++ G P+ D + V A H P V Sbjct: 123 NIDLEERLSFEIVSALTEGTIDIGILS-DSVDFSGFETFPF-HDDRLTLVVARDH-PLSV 179 Query: 184 TPAWLAAQPLILN----APETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGA 239 + A+ L + + L +E A G R++L DA+ ++ G Sbjct: 180 RSSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIERNVGI 239 Query: 240 TLLPHEASAQGRTVPLDPRIV 260 ++P EA+A +D V Sbjct: 240 GVVP-EAAANRLKKSMDIHTV 259 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 132/305 (43%), Gaps = 25/305 (8%) Query: 3 ELSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSG 62 + L +LR V +A+ F AA LH+ P +S I LE +G L R V + Sbjct: 2 NIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTP 61 Query: 63 IGATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPG 122 G+ L+ A+++L + + R G +GR+ L + A +LP L +S+PG Sbjct: 62 AGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPG 121 Query: 123 IDVQIHILTSQETLSQLVEGSLDIGLVA--LPQSPVGGLTVKPWRRDPVMAFVP---AAW 177 +++ + T+ L L++G +D+GL+ LP L P +P++ P A Sbjct: 122 VEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKAL 181 Query: 178 HAPRVVTPAWLAAQPLILN----APETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLV 233 + V LA PLI+ AP + LS + AG P + I LV Sbjct: 182 KGKQSVALQSLAELPLIIFPRRIAPAFHDAILSC--YRDAGLTPHIGQEAIQMQTIIGLV 239 Query: 234 AAGYGATLLPHEASAQGRTVPLDPRIVMRPLRPALWRPL---GIAHRAAQLEPATLHVLQ 290 +AG G L+P S R P + +PL A PL G+A R P VL+ Sbjct: 240 SAGMGIALVPQSVSNLKR-----PGVDYKPL--ANKTPLVETGLAWRRDNASP----VLK 288 Query: 291 ALWEL 295 A EL Sbjct: 289 AFLEL 293 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 114/257 (44%), Gaps = 9/257 (3%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 L L V +A GS A+ +LA S IS+LE +G LL R + V + Sbjct: 6 FDLITLSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDA 65 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGI 123 G A ++ E+ + G+ G+VR+ A+T AI LP L Q+H G+ Sbjct: 66 GNACFQHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGV 125 Query: 124 DVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPA----AWHA 179 + I S + ++ + E DIG+ A P +P G+ V +R+ + VP A H Sbjct: 126 RIDIEERNSGDVVAGIRENRTDIGIFADP-TPAEGIAVFTYRKQKLGLVVPKNHPLAAHK 184 Query: 180 PRVVTPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLP-RIQLNFNDAIKSLVAAGYG 238 ++ A L + L + RL A + + PL R Q+ DA+ +V AG G Sbjct: 185 QVSLSDA-LDYDFVSLAEATSLTERLHAA--CSRLQKPLKLRAQVRSFDAVCRMVKAGVG 241 Query: 239 ATLLPHEASAQGRTVPL 255 ++P A+ R++ L Sbjct: 242 IGVVPFLTQAEARSLGL 258 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 64.3 bits (155), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 109/244 (44%), Gaps = 4/244 (1%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 ++ +L +L+ +A L SF+ AA LHL P VS + +LE+ G L + ++ Sbjct: 45 VKNATLRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYL 104 Query: 61 SGIGATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSH 120 + G L+ +R ++ ++A E+ Q +G+ G A A Y P++L +SH Sbjct: 105 TPGGTELLHYSRTIIQQFQEA-EDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSH 163 Query: 121 PGIDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWH-- 178 G+ + + + + L+QL D+ ++ P + + + +P+ P + H Sbjct: 164 QGVTLNLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTIN-EPFAPHPYVIVAAPDHHLV 222 Query: 179 APRVVTPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYG 238 + + + + L +P ++ + + F + + +++ + IK V AG G Sbjct: 223 SKKNIPMSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMG 282 Query: 239 ATLL 242 + L Sbjct: 283 ISFL 286 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 542,718 Number of extensions: 21255 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 12 Length of query: 307 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 226 Effective length of database: 733,452 Effective search space: 165760152 Effective search space used: 165760152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)