BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2793.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095414|ref|YP_001100489.1| putative signal peptide [Hermin...   131   2e-32

>gi|134095414|ref|YP_001100489.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 226

 Score =  131 bits (330), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 139/223 (62%), Gaps = 17/223 (7%)

Query: 17  KPSSGRLHPLVAGASVAVILVSLIGVAAMTGLLPTSRSANSPQQ-LASLEQPGQNPGQPM 75
           K +S R+HPLVA A++ V+LVSL+GVAAMTG+LP S SA++ ++ +A+L++         
Sbjct: 4   KNNSNRIHPLVAAAAIGVLLVSLVGVAAMTGMLPNSNSASAQKEAIAALDKEAAEKAAEA 63

Query: 76  SQQQLAQPQARPTTSYQPQQGAYPAQAAAP---VAQRAPA------------ICSSCGEV 120
              +    +AR        + A  A+       +A+RA A            +C  CG V
Sbjct: 64  KAAEERANEARMAAQKTEDEKARQARLKEEDRRIAERAKARESAPSKVAQAQVCYDCGRV 123

Query: 121 IGVRAVRHTAPTSGVGIAGGAVVGGLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVR 180
             VR+V+  A  SGVG+ GGAVVGGLLGNQIG G+GR+LAT+AGAVGGG+AGNE+EK  R
Sbjct: 124 ESVRSVQTAAKPSGVGVVGGAVVGGLLGNQIGNGSGRSLATVAGAVGGGFAGNEIEKRTR 183

Query: 181 ATTSYVVDVRMETGKTRSFPQSGD-NWRVGDQVRVVNGHLEGR 222
              +Y V VRME GK R+FP     NW  GD+VRVV+G+L  R
Sbjct: 184 TAMTYEVRVRMEDGKIRTFPYDNQPNWSAGDRVRVVDGYLRAR 226


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 294,406
Number of extensions: 8502
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)