BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2792.p (513 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095413|ref|YP_001100488.1| lysyl-tRNA synthetase [Herminii... 860 0.0 gi|134096004|ref|YP_001101079.1| aspartyl-tRNA synthetase [Hermi... 70 2e-13 >gi|134095413|ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 511 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/515 (81%), Positives = 456/515 (88%), Gaps = 6/515 (1%) Query: 1 MTTQNTPAAQP-AADENSIIAERRAKLAAIREQGIAFPNDFRPANKAADLHSQYDGFENE 59 MTT N AA DEN IIAERRAKL+A+REQGIAFPNDFRP +KAADL +Y E Sbjct: 1 MTTHNDDAAASLPIDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLQEKYGSKTRE 60 Query: 60 ALEAEPVTVTVAGRMMLKRVMGK-AAFATLQDASGARADGRIQLYVTKDVTGEDAMAAFK 118 LEAEPVTV +AGRMMLKR GK AAFATLQDASG++ADGRIQ+YVT ++TGE AMAA Sbjct: 61 ELEAEPVTVVLAGRMMLKREAGKKAAFATLQDASGSKADGRIQIYVTLNLTGEAAMAALH 120 Query: 119 HYDLGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDL 178 HYDLGDILG GTLFKTKT EL+IKV++L+LITKSLRPLPDKFHGLADQE KYRQRYVDL Sbjct: 121 HYDLGDILGVSGTLFKTKTDELTIKVSELRLITKSLRPLPDKFHGLADQETKYRQRYVDL 180 Query: 179 IMSEETRRTFKARTAAMSSIRRFMESNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQM 238 IM+E+TRRTFKARTAA+SSIRRFME N FMEVETPMLH IPGGAAAKPF THHNALDM+M Sbjct: 181 IMNEDTRRTFKARTAAISSIRRFMERNDFMEVETPMLHTIPGGAAAKPFTTHHNALDMEM 240 Query: 239 FMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFT 298 F+RIAPELYLKRLVVGGF+RVFE+NRNFRNEGVS RHNPEFTMMEFYAAY DY+WLM FT Sbjct: 241 FLRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFT 300 Query: 299 EQVIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPDYTEAQLADIDFLRTE 358 E VIRQAAIDAHGTA LTY GRELDL+KPF RLTI GAI K+AP YT QL D ++++ E Sbjct: 301 EAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAINKFAPQYTHEQLHDAEYIKAE 360 Query: 359 LKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGI 418 LKKFGVK P A +G+GALQLALFEETAE+QLW PTYIIDYPVEVSPLARASDTVAGI Sbjct: 361 LKKFGVK----PHAHSGLGALQLALFEETAEAQLWEPTYIIDYPVEVSPLARASDTVAGI 416 Query: 419 TERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMP 478 TERFELF+ GREIANGFSELNDAEDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMP Sbjct: 417 TERFELFMVGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 476 Query: 479 PAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 P GGCGIGIDRLMM+ITDSPNIRDV+LFPHLRRED Sbjct: 477 PTGGCGIGIDRLMMIITDSPNIRDVLLFPHLRRED 511 >gi|134096004|ref|YP_001101079.1| aspartyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 599 Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 17/263 (6%) Query: 49 LHSQYDGFENEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGARADGRIQLYVTKD- 107 + +QY G +EAL + TV++ G + +R G F L+D +G +Q+ D Sbjct: 1 MRTQYCGLTSEALLDQ--TVSLCGWVHRRRDHGGVIFIDLRDR-----EGLVQVVCDPDR 53 Query: 108 VTGEDAMAAFKHYDLGDILG-----AEGTLFKTKT-GELSIKVTKLKLITKSLRPLPDKF 161 V A A ++ I G EGT T G++ + +L+++ S+ P Sbjct: 54 VDVFKAAEAVRNEFCLRITGIVRHRPEGTTNSNLTSGKIEVLAHELEVLNPSVTPPFQLD 113 Query: 162 HGLADQEMKYRQRYVDLIMSEETRRTFKARTAAMSSIRRFMESNGFMEVETPML-HPIPG 220 + + R +DL + + + R +R+F+++ GF+++ETPML P Sbjct: 114 DDNLSETTRLTHRVLDL-RRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPE 172 Query: 221 GAAAKPFITHHNALDMQMFMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFT 280 GA + NA + +P+L+ + L+V F+R +++ + FR+E + PEFT Sbjct: 173 GARDYLVPSRVNAGHF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFT 231 Query: 281 MMEFYAAYVDYQWLMGFTEQVIR 303 ++ ++++ Q + E +IR Sbjct: 232 QIDCETSFMNEQEIRDLFEGMIR 254 Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 52/200 (26%) Query: 345 TEAQLADIDFLRTELKKFGVKTDQAPLAGAGIGALQL-----------ALFEETAESQLW 393 T AQ D+ F FG D+A + IGAL++ LF++ W Sbjct: 386 TGAQDGDLIF-------FG--ADKAKVVNDAIGALRVKVGHSDFGKKNGLFDDE-----W 431 Query: 394 NPTYIIDYPV----EVSPLARAS---------------DTVAG--ITERFELFITGREIA 432 P +++D+P+ E S A+ +T G +++ +++ + G E+ Sbjct: 432 RPLWVVDFPMFEYDEDSQRWSATHHPFTAPKDGHEDLMETNPGKCLSKAYDMVLNGWELG 491 Query: 433 NGFSELNDAEDQAARFHA-QVAAKDAGDEEAMYYDADYIRALEYGMPPAGGCGIGIDRLM 491 G ++ AE Q+ F A +++A EEA + AL+YG PP GG G+DR++ Sbjct: 492 GGSVRIHRAEVQSKVFRALKISA-----EEAQLKFGFLLDALQYGAPPHGGLAFGLDRIV 546 Query: 492 MLITDSPNIRDVILFPHLRR 511 ++T + +IRDVI FP +R Sbjct: 547 TMMTGAESIRDVIAFPKTQR 566 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 900,425 Number of extensions: 35569 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 427 Effective length of database: 716,977 Effective search space: 306149179 Effective search space used: 306149179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)