BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2791.p
         (337 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095412|ref|YP_001100487.1| peptide chain release factor 2 ...   626   0.0  
gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 ...   216   2e-57

>gi|134095412|ref|YP_001100487.1| peptide chain release factor 2
           [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  626 bits (1614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/325 (91%), Positives = 310/325 (95%)

Query: 13  LEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAREEKDEDTIVAIE 72
           +EDP VW+D KRAQDLGKEKKSLEAIVHTLIK+D+EL DA DLFEMAREE DEDTIVAIE
Sbjct: 1   MEDPKVWDDPKRAQDLGKEKKSLEAIVHTLIKVDAELKDAHDLFEMAREENDEDTIVAIE 60

Query: 73  ADAENLKKMVEEMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 132
           AD + L K VE MEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG
Sbjct: 61  ADTQELLKTVEGMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 120

Query: 133 FKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFDSSNGRHTSFSSL 192
           FK EILEQSDGEVAGIKTAT+KVEGEYAYG LRTETGVHRLVRKSPFDS+NGRHTSFSSL
Sbjct: 121 FKVEILEQSDGEVAGIKTATLKVEGEYAYGLLRTETGVHRLVRKSPFDSANGRHTSFSSL 180

Query: 193 FVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPSGIVVQCQNDRSQ 252
           FVYPEVD+S EI+INPADVR+DTYRASGAGGQHINKTDSAVRLTH PSGIVVQCQNDRSQ
Sbjct: 181 FVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQ 240

Query: 253 HRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 312
           HRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF
Sbjct: 241 HRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 300

Query: 313 ETGNTKAVLDGDIDDFIAASLKQGV 337
           ETGNTKAVLDGD+DDFIAASLKQGV
Sbjct: 301 ETGNTKAVLDGDLDDFIAASLKQGV 325


>gi|134093473|ref|YP_001098548.1| peptide chain release factor 1
           [Herminiimonas arsenicoxydans]
          Length = 356

 Score =  216 bits (549), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 202/344 (58%), Gaps = 28/344 (8%)

Query: 3   SEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVH---TLIKIDSELTDAR------ 53
           +E+L ++N  L   +  ++    + + +E   L  +V       + D+++ DA+      
Sbjct: 9   TERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKDAQGMLSDP 68

Query: 54  DLFEMAREEKDEDTIVAIEADAENLKKMVEEMEFRRMF--SGPMDANNCFIDIQAGAGGT 111
           D+ E A+EE     + A +   E L     E++ ++M     P D  N F++I+AG GG 
Sbjct: 69  DMKEFAQEE-----MAAAKTRMEQL-----ELDLQKMLLPKDPNDERNIFLEIRAGTGGD 118

Query: 112 EAQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVH 171
           E+  +A  LLR Y R+ ER  ++ E++ +S  EV G K   +++ G  AY  L+ E+G H
Sbjct: 119 ESALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGH 178

Query: 172 RLVRKSPFDSSNGR-HTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTD 230
           R V++ P   + GR HTS  ++ V PE DE  ++ INPAD+R+DTYRASGAGGQHINKTD
Sbjct: 179 R-VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTD 237

Query: 231 SAVRLTHAPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVG 290
           SAVR+TH P+GIVV+CQ+DRSQH+N+A A  +L A++ +++LR++ S  Q+    K+ +G
Sbjct: 238 SAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQS--QEAATRKSLIG 295

Query: 291 WG---HQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAA 331
            G    +IR+Y   Q R+ D R N        ++DGD+ +   A
Sbjct: 296 SGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNA 339


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 615,691
Number of extensions: 24420
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 255
Effective length of database: 730,157
Effective search space: 186190035
Effective search space used: 186190035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)