BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2790.p (651 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093449|ref|YP_001098524.1| putative phosphatase or Zinc me... 822 0.0 >gi|134093449|ref|YP_001098524.1| putative phosphatase or Zinc metalloprotease with signal peptide [Herminiimonas arsenicoxydans] Length = 653 Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/650 (64%), Positives = 497/650 (76%), Gaps = 22/650 (3%) Query: 13 ADQPQAARRGLLKALAAAPLLPLTGGLSASALLAGCAT--AGAGKPFASARFTGMPAPTL 70 +D P ARR LK LA+APLLPL ++SALLA C T + + FT MPAP L Sbjct: 2 SDLPHLARRHALKFLASAPLLPLG---ASSALLAACRTPNKSTAAEYVATTFTSMPAPML 58 Query: 71 ANPAAMASTTVGSALEVSFADGSKQSYKLAYQPFFMTGDMVPDGKGGTILAGGYLDIHNQ 130 A+ AAMA+TTVGS L V + D S +SY+LAYQPFF+TG+ VPDGKGG IL+G Y DI+N+ Sbjct: 59 ADAAAMATTTVGSTLNVHYGDQSTRSYQLAYQPFFITGEQVPDGKGGKILSGAYFDINNK 118 Query: 131 PIIDRSVAGRERQFYSDCPDGSSLLTLQNAKVPGVKGNAVFAVVQFEYTTRDQKQAA--- 187 IIDRS+AG+ERQ +SD PDG+SLL+L N V +KG AVFAVVQFEYT+RDQ AA Sbjct: 119 AIIDRSIAGKERQIFSDAPDGTSLLSLPNPTVDNIKGKAVFAVVQFEYTSRDQLGAASGR 178 Query: 188 --MYGQLPSPIAVLTLDQDPSSGKLSLVQYHNVDTSQVNGLWITCGASLSPWNTHLSSEE 245 YG LPSPIAVLTLDQD +GKLSLV+YHNVDT+ V+GLWITCGASLSPWNTHLSSEE Sbjct: 179 NNAYGTLPSPIAVLTLDQDQDNGKLSLVKYHNVDTASVHGLWITCGASLSPWNTHLSSEE 238 Query: 246 YEPDASAIAANPQFKAFSKNLYGDENRANPYHYGHLPEVTVNPDGTGSIKKHYCLGRISH 305 YEPDA I+ NP FK FSKNL+GDEN+ANPYHYGHLPEVTV+PDG+GSIKKHYCLGRISH Sbjct: 239 YEPDAQFISENPFFKKFSKNLFGDENKANPYHYGHLPEVTVHPDGSGSIKKHYCLGRISH 298 Query: 306 ELVQVMPDQRTVLMGDDATNGGLFMFIADRAADLSAGTLYVARWEQVSGVGPGA--GKLS 363 EL+QVMPD RTVLMGDD TNGG FMFIAD+ DLSAGTLYVA+ + P A L Sbjct: 299 ELIQVMPDHRTVLMGDDYTNGGFFMFIADKEKDLSAGTLYVAKVGAGFSIDPAAPGAALH 358 Query: 364 WVRLGSATSAEVKAMAERYKASDIMDIRTTDPADGSFSKIPFNGKFNWVRVKPGMQKAAA 423 W++LG A+SAE++ +A+ K SDIM TDPAD S++K+ +G NWV++KPGM++AAA Sbjct: 359 WIKLGHASSAEIERLADTLKPSDIMRSVKTDPADVSYTKLYMDGIANWVKLKPGMERAAA 418 Query: 424 FLETHRYAALAGGSLGFTKMEGTTVNARDKIAYSAMSYIQTSMLN-------GSGHIKVE 476 FLETHRYA L G S+GF+KMEGTTVN +DKIAYSA+ IQ SM+ SG + Sbjct: 419 FLETHRYANLVGASMGFSKMEGTTVNIKDKIAYSALQNIQGSMVKNNPAWNPASGITVDK 478 Query: 477 GPKAGAVYALNLRGGQRDAGGNAIDSEWVAIDMAPPAALVGVDLKTPDALGNLADQEHIA 536 AG ++A L GGQRD G AI SEWV + A L+G D+ DALGNLA+ + IA Sbjct: 479 AIVAGGIFAHKLTGGQRDTSGAAIASEWVPVQTR--ALLIGEDIAA-DALGNLANPDKIA 535 Query: 537 NPDNIKFSEKLRTLFIGEDSGMHVNNFLWAYNVDTKALTRVLSCPAGAESTGLHAVDEIN 596 NPDN+KFSEK+RTLFIGEDS HVNNFLWAYNVDTK L R++S P+GAE++GLHAVDEIN Sbjct: 536 NPDNLKFSEKMRTLFIGEDSSTHVNNFLWAYNVDTKKLARIMSMPSGAEASGLHAVDEIN 595 Query: 597 GWTYVMSNFQHAGDWEKGLHDKVKDTLDPLVRANYKDRFGATVGYLTGLP 646 GWTY+MSNFQHAGDW LH KVK TLDPL++ANY +RF A VGYLT P Sbjct: 596 GWTYIMSNFQHAGDWSGKLHSKVKATLDPLIKANYNNRFSAAVGYLTADP 645 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,271,703 Number of extensions: 54236 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 1 Length of query: 651 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 563 Effective length of database: 710,387 Effective search space: 399947881 Effective search space used: 399947881 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)