BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2789.p
         (202 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095411|ref|YP_001100486.1| hypothetical protein HEAR2228 [...   326   4e-91

>gi|134095411|ref|YP_001100486.1| hypothetical protein HEAR2228
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  326 bits (836), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 153/202 (75%), Positives = 178/202 (88%)

Query: 1   MGQSDSNRVATLAMRANLDSLYLLMSKLYRRNPAEWKKTAASREEAEKKVRQAIEQRQAW 60
           MGQSD+NR+ATL MR NLDSLYLLM KLYRRNP EWKKTAASR+E+ K+VR AIEQRQ W
Sbjct: 43  MGQSDTNRIATLGMRNNLDSLYLLMEKLYRRNPGEWKKTAASRDESIKRVRDAIEQRQPW 102

Query: 61  PELQGKRDIQAMTLALSADFKGDRVAAFIDATADMIIVAHGNKIEFFLVDGLDAQHLYNA 120
            EL+G+RDI+A++LAL+++F GDRVAAFI A+ADMII AH  K EFFLVDGLDAQHLYNA
Sbjct: 103 TELRGQRDIKALSLALTSEFNGDRVAAFIYASADMIIAAHDGKTEFFLVDGLDAQHLYNA 162

Query: 121 ARNVEIAAWVLASRRSAAGVPLLLSDEIGSEARNLSFEREFGKIVGRLDLLAEFMTERYR 180
           ARN+EIA W+LA+RR+  G  LLLSD +G   RNLSFEREFGKIVGRLDLLA F+TE+YR
Sbjct: 163 ARNIEIAVWLLANRRNTEGKILLLSDNMGESGRNLSFEREFGKIVGRLDLLAVFITEKYR 222

Query: 181 RAGISYVQNLLGGSFLQFLPVR 202
           RAGI+Y+QN++GGSFLQFLPVR
Sbjct: 223 RAGINYIQNMIGGSFLQFLPVR 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 355,083
Number of extensions: 13446
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 125
Effective length of database: 746,632
Effective search space: 93329000
Effective search space used: 93329000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)