BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2788.p (554 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 152 3e-38 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 142 5e-35 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 138 7e-34 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 137 1e-33 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 135 8e-33 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/175 (45%), Positives = 111/175 (63%), Gaps = 3/175 (1%) Query: 359 LSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFKPI 418 ++ KLH+AE+Q QA HD LTGLPNR +L +RM+ A+ H+ R A+ FLDLD FK I Sbjct: 273 ITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFI 332 Query: 419 NDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAEKC 478 ND+LGH+ GD +L+ +RL R DT+AR GGDEFVLL+T QP E ++ Sbjct: 333 NDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLT--SQPSEESITHTMQRV 390 Query: 479 IKVVSEPLHLAQGEYQLGVSVGIAVC-DGSCDADSLLQAADQAMYAAKGNGRGGY 532 + V++P E+++ SVG+ +C D DA++LL+ AD AMY AK GR + Sbjct: 391 LHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNF 445 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/192 (44%), Positives = 118/192 (61%), Gaps = 8/192 (4%) Query: 345 RDEVGHLT--LAFNGLLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRAR 402 R+ G +T LA ++ K QA ++ AH DVLTGLPNR +L ER + AL A + Sbjct: 402 READGRITHYLAIEEDITNQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQ 461 Query: 403 TGVALLFLDLDGFKPINDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITD 462 +A++FLDLD FK INDTLGH GD +L E+ +RLR V R DTL+R+GGDEFVLL+ Sbjct: 462 ATLAVMFLDLDHFKNINDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPG 521 Query: 463 LGQPYEHGAQVLAEKCIKVVSEPLHLAQGEYQLGVSVGIAV--CDGSCDADSLLQAADQA 520 + A+ +A++ ++ ++EP + E + S+GIAV DG D ++L + AD A Sbjct: 522 ANR---ESAKKIAQELMRAINEPYRIGSHELNVMASIGIAVYPADG-MDFETLCKNADVA 577 Query: 521 MYAAKGNGRGGY 532 MY AK GR Y Sbjct: 578 MYRAKQEGRNAY 589 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 116/197 (58%), Gaps = 10/197 (5%) Query: 357 GLLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFK 416 L+S+L+ ++ QA HD LTG+PNR + E L A R+R AL FLDLD FK Sbjct: 152 NLISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKLYALFFLDLDKFK 211 Query: 417 PINDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAE 476 INDTLGH GDL+LQ V RRLR+ R D LAR+GGDEFV+L++++ E +A Sbjct: 212 LINDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMAS--ESDIARVAA 269 Query: 477 KCIKVVSEP-LHLAQGEYQLGVSVGIAVC--DGSCDADSLLQAADQAMYAAKGNGRGGYV 533 K + VV +P L L + + S+GIA+ DG D ++LL AD AMY+AK G Y Sbjct: 270 KLVDVVRDPFLDLGGNDIDVSPSIGIALYPRDGQ-DVETLLMHADLAMYSAKSAGAATYR 328 Query: 534 IAPARPTSSANASAHRQ 550 +S NAS+ R+ Sbjct: 329 FFD----TSLNASSARE 341 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/195 (44%), Positives = 112/195 (57%), Gaps = 10/195 (5%) Query: 358 LLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFKP 417 L L + EL QA D LT LPNR +L +R+ L A R T AL+F+DLDGFK Sbjct: 252 LAKSLAVANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKA 311 Query: 418 INDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAEK 477 IND+LGH GD++L EV +R+R R DT AR+GGDEFVLLI ++ +P + A +A+K Sbjct: 312 INDSLGHHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLI-EVTEPED--AASVADK 368 Query: 478 CIKVVSEPLHLAQGEYQLGVSVGIAVC--DGSCDADSLLQAADQAMYAAKGNGRGGYVIA 535 ++++P + + SVGI + DG D LL AD AMY K GR GY Sbjct: 369 LCNIINQPFEIDFHTLGVSASVGITIYPDDGHTPHD-LLVNADAAMYHTKSTGRNGYHFF 427 Query: 536 PARPTSSANASAHRQ 550 A S NA+AH Q Sbjct: 428 EA----SMNANAHNQ 438 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 135 bits (339), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 125/208 (60%), Gaps = 12/208 (5%) Query: 330 MTRGELPLSPLPVVRRDEVGHLTLAFNGLL---SRLKLHQAELQHQAHHDVLTGLPNRMM 386 M EL ++P+ VGH F G+L +++K +Q +L+HQA++D LTGL NR + Sbjct: 347 MFLNELYIAPVSDTSGGAVGH----FVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNL 402 Query: 387 LAERMEAALTHACRARTGVALLFLDLDGFKPINDTLGHKAGDLVLQEVTRRLRQVARHGD 446 L ER + AL A R ++L+F+DLD FK +ND++GH AGD ++ V RL+ R GD Sbjct: 403 LNERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDGD 462 Query: 447 TLARVGGDEFVLLITDLGQPYEHGAQVLAEKCIKVVSEPLHLAQGEYQLGVSVGIAVC-- 504 T+AR+GGDEFVLL+T+ Q + ++ + +P+ + E + S+G+A Sbjct: 463 TVARIGGDEFVLLLTN--QSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSMGVARFPE 520 Query: 505 DGSCDADSLLQAADQAMYAAKGNGRGGY 532 DG D++SLL AD AMY AK +GR + Sbjct: 521 DGE-DSESLLANADTAMYRAKSSGRNNF 547 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 926,101 Number of extensions: 34226 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 31 Length of query: 554 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 468 Effective length of database: 716,977 Effective search space: 335545236 Effective search space used: 335545236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)