BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2787.p
         (564 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095410|ref|YP_001100485.1| ssDNA exonuclease [Herminiimona...   923   0.0  

>gi|134095410|ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 564

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/562 (80%), Positives = 505/562 (89%)

Query: 1   MIRVTTRPYDIGQAEQLIAEGVHPVLARVYAARGLSTARELASELNALFAPSGLLHIEAA 60
           M R+TTRPY    AE++   GVHPV+AR+Y ARGL   +EL SEL+AL  P GLLHI+ A
Sbjct: 1   MTRITTRPYPFRDAERMRQSGVHPVMARLYTARGLLDLKELTSELSALIPPPGLLHIDVA 60

Query: 61  ASYLADAIAANKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120
           A +LADAIA  KKLVIVADYDCDGATACAV LRGLR +GA VD+IVPNRFEYGYGLTPEI
Sbjct: 61  AVFLADAIADKKKLVIVADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEI 120

Query: 121 VELTVREKQPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDTLPQARVIVNPNQP 180
           V L VREK PDIIVTVDNGIASIDGVAEA RRGIDVVVTDHHLP DTLP ARVIVNPNQP
Sbjct: 121 VALAVREKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQP 180

Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240
            CGFPSKNLAGVGVMFYVLLALRAEMRKRG+FDAQTQP+LD+LLDLVALGTVADVVKLDA
Sbjct: 181 DCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDA 240

Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300
           NNRILVAQGLKRMR+G+MH GIAALFRAAGREAR A+PFDLGFA+GPRLNAAGRL+DMSL
Sbjct: 241 NNRILVAQGLKRMRAGRMHAGIAALFRAAGREARSASPFDLGFALGPRLNAAGRLSDMSL 300

Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW 360
           GIECLTTDDEGRAWAIAQQLD INRERR IEA MQDTALLLLD ++P D  TI++FDPSW
Sbjct: 301 GIECLTTDDEGRAWAIAQQLDEINRERRTIEADMQDTALLLLDKFDPQDSTTISIFDPSW 360

Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420
           HQGVIGIVASRLKDKFYRPTITFA   +G+IKGSGRSIAGFHLRDALDLVSKHAP+++ K
Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPTLIDK 420

Query: 421 FGGHAMAAGLTIHAEAFDAFSQAFEAVGRDWLTQNQLERVIETDGALEDAYYSVEFIGLM 480
           FGGHAMAAGLTI A++ D+F+QAFEAVG+DWL++NQLERVIETDG LE AY++ +FI LM
Sbjct: 421 FGGHAMAAGLTIRADSLDSFTQAFEAVGKDWLSRNQLERVIETDGPLEPAYFTTQFIELM 480

Query: 481 DQQVWGQGFAPPVFCDHFRVLNQRILKDKHLKLQLEKGGRKYDAIWFGHTDALPDHAQVA 540
            +QVWGQGFAPP+FCD FRV+NQRILK++HLKL LEK G+++DAIWFGH D+LP  A+VA
Sbjct: 481 AEQVWGQGFAPPLFCDEFRVVNQRILKERHLKLTLEKDGQQFDAIWFGHIDSLPATARVA 540

Query: 541 FRLDANEYNGKTTVQLMVEHAE 562
           +RLDANE+NG+T VQL+VEHAE
Sbjct: 541 YRLDANEFNGRTRVQLLVEHAE 562


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,085,215
Number of extensions: 45562
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 477
Effective length of database: 713,682
Effective search space: 340426314
Effective search space used: 340426314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)