BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2786.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095409|ref|YP_001100484.1| hypothetical protein HEAR2226 [...   330   7e-92

>gi|134095409|ref|YP_001100484.1| hypothetical protein HEAR2226
           [Herminiimonas arsenicoxydans]
          Length = 350

 Score =  330 bits (846), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 174/350 (49%), Positives = 227/350 (64%), Gaps = 7/350 (2%)

Query: 1   MNQLDILIPFALPPAELARDLLRQSHAPALAMLLGRGKAAPRLAHDPFSRALPHEHWLAQ 60
           M QL++L+PFA+PPAELARDLLR+   PALA LL     + R   D FSR LPHEHWLAQ
Sbjct: 1   MTQLELLLPFAMPPAELARDLLRELKMPALATLLAHASVSGRQVSDGFSRTLPHEHWLAQ 60

Query: 61  RFGLPPGAQDSS-PAAASALMQSLGHAPQTGHWFVLHPAHIHVARDHLVLTDIGQLQLQE 119
           +FGL   A +SS PA A + MQ++    + G WF+L P H+H+ARDHLVLTD  QL L E
Sbjct: 61  QFGLTGQADNSSSPALAISAMQTMALPAEPGTWFILQPVHLHIARDHLVLTDPRQLHLSE 120

Query: 120 EESRRLFAAALPLFTEIGHELVYGDERTWFIRADAWAGLRTSTPSAASGRNIDIWMPEGP 179
            + R LF     LF E G  L YGD +TWF+RAD WA L+TSTP AA G NIDIWMP+GP
Sbjct: 121 ADGRALFEITHTLFEESGKTLRYGDAQTWFLRADDWAALQTSTPDAACGHNIDIWMPKGP 180

Query: 180 GELAWRKLQNEVQMQWFAESLNEQREMRGQKAINSIWIWGGANAGI-SAQAHYTQSFGLR 238
            E  WR+LQNE+QM W A ++NEQRE RG K +NSIW+WGGA++   +A A   ++F   
Sbjct: 181 NERDWRRLQNEIQMHWHAHAINEQREARGLKPVNSIWLWGGASSTTATAPAKIEETFTFP 240

Query: 239 GWLRAFGADSGQ----TGAAEVAKGNGQR-LLVLDALAEAALAEEWGLWLQHLEHLDRDW 293
           G  + F A +G+    T AA++ K   Q  LL+LD L E ALA +W  WL   + ++  W
Sbjct: 241 GAHKPFAAQAGRQIAITSAADMIKARPQHGLLLLDQLIEPALAGDWSEWLTRFQAMEAAW 300

Query: 294 LAPLLVSLRTGTLASLKLVLTGADRSVEVAVTRAALRRFWRKPSLSGLSA 343
             PLL +++ G L  L + L+        A+ +++LR+FW KP+L+ L A
Sbjct: 301 FVPLLDAIKNGQLDKLTITLSHNTACSSFALGKSSLRKFWCKPTLARLVA 350


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 675,460
Number of extensions: 27247
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)