BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2785.p (706 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas ... 214 1e-56 gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded... 189 6e-49 gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas ... 130 3e-31 gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Hermi... 82 9e-17 gi|134093954|ref|YP_001099029.1| putative exonuclease V [Hermini... 73 4e-14 >gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 762 Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 216/705 (30%), Positives = 335/705 (47%), Gaps = 95/705 (13%) Query: 26 LNPQQRAAVEHGSQLPPAQQAPLLIVAGAGTGKTNTLAHRVARLILDG-ADPQRILLLSF 84 LNP+Q AAV PAQ P LI+AGAG+GKT L R+A LI G P IL ++F Sbjct: 8 LNPEQLAAVT-----LPAQ--PALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTF 60 Query: 85 SRRAAADLGRRVGQVIAEVLGLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTI 144 + +AA ++ R+ ++ P T W GTFH + RLLR + +L + F I Sbjct: 61 TNKAAKEMMTRLSAMM-------PINTRGM--WIGTFHGLCNRLLRAHYRDAALPQTFQI 111 Query: 145 QDRGDSEDLLGLLRHELGLSATE-QRFPLKATCLSIYSRVVNTRQDLGQVLASHFPWCRE 203 D S+D L +++ L + + +++P + +N +D G + A + Sbjct: 112 LD---SQDQLSMIKRLLKANNIDDEKYPPRNLMY-----FINGAKDNG-LRAQDVEAHDD 162 Query: 204 WERQLGELFSQYVQAKENQHVLDYDDLLLFWAEMLSDTQ-IAQSVGARFDHVLVDEYQDT 262 + R++ EL+ Y Q + + V+D+ +LLL E+LS Q + + +RF H+LVDE+QDT Sbjct: 163 YNRKMVELYEIYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFKHILVDEFQDT 222 Query: 263 NRLQAEILQRIKPDGGGVTAVGDDAQSIYSFRGATVRNILDFPSLFAQPARLLTLEQNYR 322 N LQ L+ + G V AVGDD QSIY+FRGA V N+ F F + L+ LEQNYR Sbjct: 223 NNLQYNWLKLMAGTQGAVFAVGDDDQSIYAFRGANVGNMSAFEREF-KVENLIKLEQNYR 281 Query: 323 STQAILQASNAVIADAPERHFKNLWSDKISSHKPQLVVIPDEAEQARWVANRILAHREEG 382 S IL +N +IA+ +R KNL +D + ++ + ++A+W+ + EG Sbjct: 282 SHGHILDTANTLIANNTKRLGKNLHTDAGHGEQVRIFESTSDLQEAQWIIEETKSLIAEG 341 Query: 383 LTLKSQAVLFRTATHSAALELELVRRNIPFVKFGGLKFLESTHIKDLLALLRLAHNPSAR 442 T AVL+R+ S +E L IP+ +GG +F E +K +A L+L N Sbjct: 342 GTRSEIAVLYRSNAQSRVIEHALFSAGIPYRVYGGQRFFERAEVKHAIAYLQLMDNLHND 401 Query: 443 MAGFRVLQL-IPGVGPATAKKVLDRMAAASDPTQALQDFQP----PASIAL-QWRDFAQA 496 A RV+ G+G + +++ D AA +L P A +L + + Sbjct: 402 SAFLRVVNFPTRGIGARSLEQLQD---AARQYGISLYAAVPYISGKAGTSLGAFVKLIEG 458 Query: 497 YAFMRGTTTWPADLQAARD--WYLPLLEQRYEDADARLLDIEQLVALAQGYASREKL--- 551 F P +Q D + ++ E AD R+ ++EQLV+ A + S E Sbjct: 459 ARFETQHLPLPEMVQVVLDASGLITHYQKEKEGAD-RIENLEQLVSAATLFVSEEGFGHD 517 Query: 552 -------LTELTLDPPEASSDFSGVPYRDED------------YLTLSTI---------- 582 ++ P + D G+ D D +L+ +++ Sbjct: 518 APALMGPTSKQMAGPAITTQD--GIEVLDADAPLPAVMSPLSAFLSHASLEAGDNQAQAG 575 Query: 583 ---------HSAKGQEWRSVHVLNVVDGCIPSDLATGSEVEIAEERRLLYVAMTRAKEYL 633 HSAKG E+ +V + + +G P + + E + EERRL+YVA+TRAK L Sbjct: 576 QDALQLMTVHSAKGLEFDAVFITGLEEGLFPHENSQKEEGGVEEERRLMYVAITRAKRRL 635 Query: 634 HLVVPQRFYLTQQTAQGERHVNGIRSRFITPRMLPHFEDSL-WLS 677 ++ Q L G+ N ++SRF +P EDSL WLS Sbjct: 636 YISFSQTRML-----HGQMRYN-MKSRFFDE--MP--EDSLKWLS 670 >gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas arsenicoxydans] Length = 684 Score = 189 bits (479), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 231/446 (51%), Gaps = 42/446 (9%) Query: 26 LNPQQRAAVEHGSQLPPAQQAPLLIVAGAGTGKTNTLAHRVARLILD-GADPQRILLLSF 84 LN QR A+++ P L++AGAG+GKT + ++A LI D G + + + L+F Sbjct: 12 LNAPQREAIKY-------MDGPCLVLAGAGSGKTRVITQKIAHLIEDCGYEARHVAALTF 64 Query: 85 SRRAAADLGRRVGQVIAEVLGLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTI 144 + +AA ++ R+ +++ E QL S TFH++G ++LR A + L++ F+I Sbjct: 65 TNKAALEMQERIAKLLKE------PKQAKQLTVS-TFHSLGVKILRQEAKELGLKDRFSI 117 Query: 145 QDRGDSEDLLGLLRHELGLSATEQRFPLKATCLSIYSR-VVNTRQDLGQVLASHFPWCRE 203 D S+D L++ ++ ++ +Q T +S++ +++ L Q E Sbjct: 118 MD---SDDCFSLVQ-DMAITTDKQLVRRIQTAISLWKNGLIDPDAALNQAKD-------E 166 Query: 204 WERQLGELFSQYVQAKENQHVLDYDDLLLFWAEMLSDTQIAQSVGAR-FDHVLVDEYQDT 262 E Q ++ YV +D+DDL+ E+ + + R ++LVDEYQDT Sbjct: 167 DEAQAARIYRSYVATLSAYQAVDFDDLIRLPVELFRGNEAVRDKWQRKLRYLLVDEYQDT 226 Query: 263 NRLQAEILQRIKPDGGG---VTAVGDDAQSIYSFRGATVRNI----LDFPSLFAQPARLL 315 N Q E+++ + G TAVGDD Q+IY++RGAT+ N+ +DFP L +++ Sbjct: 227 NTCQYELVKLLVTGIGKKPMFTAVGDDDQAIYAWRGATIENLKQLQVDFPDL-----KVV 281 Query: 316 TLEQNYRSTQAILQASNAVIADAPERHFKNLWSDKISSHKPQLVVIPDEAEQARWVANRI 375 LEQNYRS+ ILQA+N+VI + P+ K+LWS+ +++ + D+ ++A +A + Sbjct: 282 KLEQNYRSSTRILQAANSVIGNNPKLFEKSLWSEHGLGDPVKVLGMQDDDQEAEQIAIML 341 Query: 376 LAHR-EEGLTLKSQAVLFRTATHSAALELELVRRNIPFVKFGGLKFLESTHIKDLLALLR 434 AHR E A+L+R S +E L + IP+ GG F + IKD+++ LR Sbjct: 342 SAHRFERRAKFSDYAILYRGNHQSRVIEQALRKERIPYTISGGQSFFDRAEIKDIISYLR 401 Query: 435 LAHNPSARMAGFRVLQLIP-GVGPAT 459 L N A R + GVG +T Sbjct: 402 LVANQDDDPAFIRAVTTPKRGVGQST 427 >gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 975 Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 27/336 (8%) Query: 43 AQQAPLLIVAGAGTGKTNTLAHRVARLILD-GADPQRILLLSFSRRAAADLGRRVGQVIA 101 A P+LI+AG G+GKT TL R+ LI + G P+ + +++F+ +AA +L R+ +A Sbjct: 26 ATDGPVLIIAGPGSGKTFTLVERIVYLITNKGIAPESLFVVTFTDKAARELTTRISNRLA 85 Query: 102 EVLGLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTIQDRGDSE--------DL 153 E LG+ L GTFH+I RLL DY L+ +FT+ D+ D + D Sbjct: 86 E-LGIQFNLNEMYL---GTFHSICLRLLEDYREFTRLKRSFTLFDQFDQQYFLYQRIKDF 141 Query: 154 LGLLRHELGLSATEQ-RFPLKATCLSIYSRVVNTRQDLGQVLASHFPWCREWERQLGELF 212 L +L + + R+ L ++V D + A+ P R L F Sbjct: 142 RELPDAQLVIGDDQTGRWAQSENLLKWLNKVSEEALDAATLAAAPEPEIR----ALATCF 197 Query: 213 SQYVQAKENQHVLDYDDLLLFWAEMLSDT-QIAQSVGARFDHVLVDEYQDTNRLQAEILQ 271 ++Y + + LD+ + ++L ++ + + H++VDEYQDTN +Q IL Sbjct: 198 AKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAQLRGKLTHLMVDEYQDTNTIQERILL 257 Query: 272 RIKPDGGGVTAVGDDAQSIYSFRGATVRNILDFPSLFAQ-PARLLTLEQNYRSTQAILQA 330 + + + VGDD Q +Y FRGAT+RNIL+FP+LF + + L NYRS I++ Sbjct: 258 LLAGERCNLCVVGDDDQGLYRFRGATIRNILEFPALFDDGQCKQVKLTVNYRSHPDIIRF 317 Query: 331 SNAVIADAPERHFKNLWSDKISSHKPQLVVIPDEAE 366 N + + +W D + ++P E E Sbjct: 318 YNEWMKE-------QVWDDGTRVFRFAKQIVPREDE 346 >gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans] Length = 588 Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 43/320 (13%) Query: 27 NPQQRAAVEHGSQLPPAQQAPLLIVAGAGTGKTNTLAHRVARLILDGAD-PQRILLLSFS 85 NP Q AA Q +++AG G+GKT TL ++AR++ + + P+ + +++S Sbjct: 4 NPGQLAAYN--------SQGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYS 55 Query: 86 RRAAADLGRRVGQVIAEVLGLAPGATPPQLPWSGTFHAIGAR-LLRDYAAVISLEENF-- 142 + A +L RR+ E LGL P L + GT H R LL Y + L +F Sbjct: 56 QECARELARRI-----ENLGL---QQAPNL-FIGTVHGFCLRHLLMPYGRLAGLPISFPL 106 Query: 143 TIQDRGDSEDLLGLLRHELGLSATEQRFPLKATCLSIYSRVVNTRQDLGQVLASHFPWCR 202 ++ + S+ LL + G + Q P K L + R V R + Sbjct: 107 SVATQRVSDRLL----KQTGDALFGQNHPYKVIDLGRHRRSVLNRNSVA----------- 151 Query: 203 EWERQLGELFSQYVQAK--ENQHVLDYDDLLLFWAEMLSDTQ-IAQSVGARFDHVLVDEY 259 W + ++ ++DYDD+++F ++++ + V A+F + VDEY Sbjct: 152 -WRSEEELAAWAEAYEAALRDEGLIDYDDMVVFGQRLIAEHDWVLPLVQAKFPVLAVDEY 210 Query: 260 QDTNRLQAEILQRIKPDGG-GVTAVGDDAQSIYSFRGATVRNILDFPSLFAQPARLLTLE 318 QD I++R+ DGG + AVGD QSIY F GA +++ + + + L+ Sbjct: 211 QDLGVALHRIVKRLAFDGGVRLFAVGDADQSIYGFTGADGALLMELAA--RRDIEPVQLQ 268 Query: 319 QNYRSTQAILQASNAVIADA 338 NYRS I+ AS + +A Sbjct: 269 LNYRSGAGIVTASEMALGEA 288 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] Length = 1096 Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 116/281 (41%), Gaps = 50/281 (17%) Query: 215 YVQAKENQHVLDYDDLLLFWAEMLSDTQIAQSVGARFD----HVLVDEYQDTNRLQAEIL 270 Y K Q V D+ DL +L++ + A + +R D HVL+DE+QDTN LQ I+ Sbjct: 373 YQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHVLLDEFQDTNPLQWSIV 432 Query: 271 QRI------KPDGGGVTAVGDDAQSIYSFRGATVRNI-LDFPSLFAQPARLLTLEQNYRS 323 Q D + VGD QSIY FR A R +L AQ A L Q R+ Sbjct: 433 QAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAKETLVAQGADFLRTNQTRRN 492 Query: 324 TQAILQASNAVIADAP--------ERHFKNLWSDKISSHKPQLVVI------------PD 363 I+ NA P E+ +W + Q V+ P Sbjct: 493 AAGIVDVLNASFVANPIYQPQTTLEQSPGAVWQLPLVQQDKQEKVVWSPVQLRDPLTTPR 552 Query: 364 EA-------EQARWVANRILAHREEGLTLKSQ-----AVLFRTATHSAALELELVRRNIP 411 E E+ R VA IL R+E LKS+ +L + TH A E L IP Sbjct: 553 EEEEDARRLEEGRAVALAILQARKE---LKSERWSDVMLLVKKRTHLRAYERALREAGIP 609 Query: 412 FV--KFGGLKFLESTHIKDLLALLRLAHNPSARMAGFRVLQ 450 F K GGL LES + DL+ALL P +A VL+ Sbjct: 610 FASDKRGGL--LESLEVADLIALLNFLITPHDNLALAHVLK 648 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,295,450 Number of extensions: 51979 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 6 Length of query: 706 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 618 Effective length of database: 710,387 Effective search space: 439019166 Effective search space used: 439019166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)