BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2784.p
         (421 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095407|ref|YP_001100482.1| outer membrane lipoproteins ABC...   667   0.0  

>gi|134095407|ref|YP_001100482.1| outer membrane lipoproteins ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 421

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/421 (77%), Positives = 369/421 (87%)

Query: 1   LSLIKNLPFEWLVGIRYTRAGKRSGRNSFISFISLISMAGIGLGVAALIVVLSVMNGFQK 60
           +S+IKNL FEWLVGIRYTRAG+RSGRNSFISFISLISMAGI LGVAALI+VLSVMNGFQK
Sbjct: 1   MSIIKNLSFEWLVGIRYTRAGRRSGRNSFISFISLISMAGIALGVAALIIVLSVMNGFQK 60

Query: 61  EVRDRMLSVLPHIEVFDASGSMHDWQAVAKQAFQNPEVLGAAPYVAGQGMMTRDDNLRGV 120
           EVRDRMLSVL HIEVF+  G + DWQA A++AF N EV GAAPYV  Q MMTRD+ LRGV
Sbjct: 61  EVRDRMLSVLSHIEVFEPYGGLPDWQATAREAFMNKEVRGAAPYVDAQAMMTRDETLRGV 120

Query: 121 MVRGVLPEEEPKVSDVAKQIKQGSFDSLKPGEFNIVIGGELARGMRVGLGDKVTLIVPQG 180
            VRGVLP+EEPKVSDVA Q+K+GS   L+ GEFNIV+G ELAR M   LGDKVT+I PQG
Sbjct: 121 AVRGVLPDEEPKVSDVASQVKEGSLHDLRSGEFNIVLGNELARSMNARLGDKVTMIAPQG 180

Query: 181 QVTPAGVLPRLKQFTVTGIFEAGHYEFDSSLAFIDIKDAETLFRMDAPTGVRLRIRDMLQ 240
           QVTPAGV+PRLKQF V GIF++GH+E+DS+LAFI I DA T+F++ AP+G+RL+I DM +
Sbjct: 181 QVTPAGVIPRLKQFRVVGIFDSGHFEYDSTLAFIHIDDAMTMFKLGAPSGLRLKIEDMQR 240

Query: 241 APEVTQQLARTLSGDLYLRDWSQQNSNWFAAVKTEKRMMFIILTLIIAVAAFNLVSTLVM 300
           AP+V   L+RTLSGD+ +RDWS+QN NWFAAV+TEKRMMFIILTLIIAVAAFNLVSTLVM
Sbjct: 241 APQVALDLSRTLSGDVLIRDWSKQNRNWFAAVQTEKRMMFIILTLIIAVAAFNLVSTLVM 300

Query: 301 TVTDKQADIAILRTLGASPGSIMKIFVIQGALVGLIGTAVGVGLGVLVALNIDVLVPAIE 360
           TVTDKQADIAILRTLGASPGSIMKIF+IQGALVGLIGTA+GVG GVL+A NIDV+VP IE
Sbjct: 301 TVTDKQADIAILRTLGASPGSIMKIFMIQGALVGLIGTAIGVGGGVLIAANIDVIVPFIE 360

Query: 361 HAFHVQFLPKSIYVISELPSELIWSDVYTIGGVAVVLAFLATLYPSWAAARVKPAEALRY 420
               VQFLPK IY+IS LPS+L W DV+TIGGVAVVLAFLATLYPSW AARVKPAEALRY
Sbjct: 361 RILGVQFLPKDIYLISSLPSDLRWPDVWTIGGVAVVLAFLATLYPSWWAARVKPAEALRY 420

Query: 421 E 421
           E
Sbjct: 421 E 421


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 749,628
Number of extensions: 29608
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 337
Effective length of database: 723,567
Effective search space: 243842079
Effective search space used: 243842079
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)