BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2783.p (236 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 353 3e-99 gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 182 2e-47 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 170 5e-44 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 164 4e-42 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 131 4e-32 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 353 bits (907), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 174/225 (77%), Positives = 195/225 (86%) Query: 9 QAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPS 68 + VL+ R L KTFTQGKY+V VL +++D+ GE+VAIVGASGSGKSTLLHLLGGLDTPS Sbjct: 3 EHVLACRDLAKTFTQGKYAVDVLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPS 62 Query: 69 TGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQA 128 G+V+LL +DFA L E RG LRN+SLGFVYQFHHLLPEFSALDNVAMPLMIRRV R+QA Sbjct: 63 AGSVTLLHQDFASLDEKTRGNLRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQA 122 Query: 129 QEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTAD 188 E AR +L +VGL RV+HVPGELSGGERQRVALARALVTQPACVLADEPTGNLDR TA Sbjct: 123 HETARAILARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAH 182 Query: 189 RTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSDQGLRVAS 233 +TF+LM+ELSRTLGTAFVIVTHDIELA C RILRLSD+GL+ S Sbjct: 183 KTFDLMLELSRTLGTAFVIVTHDIELATHCDRILRLSDEGLQPYS 227 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 182 bits (461), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 130/198 (65%), Gaps = 2/198 (1%) Query: 28 VKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSLLGKDFAGLGESER 87 + +L VD V G+ +AIVGASGSGKSTLL LL GLDTPS GTV L G D L E R Sbjct: 27 LTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGIDIFALDEDGR 86 Query: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQAREMLEKVGLAQRVSH 147 LR + +G V+Q LL +A++NV +PL +R +A+E+A ML +VGL+ R+ H Sbjct: 87 AGLRKEKIGVVFQSFQLLGHLNAVENVMLPLELR--NDGKAREKAEAMLARVGLSSRLKH 144 Query: 148 VPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 P LSGGE+QRVALARA V++P + ADEPTG+LD +T + +LM EL++ + V+ Sbjct: 145 YPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGESVIQLMFELNQERKSTLVL 204 Query: 208 VTHDIELAGRCGRILRLS 225 VTHD +A C R + ++ Sbjct: 205 VTHDPSIAALCKRTITIA 222 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 170 bits (431), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 137/220 (62%), Gaps = 1/220 (0%) Query: 7 NRQAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDT 66 N ++ RG+ KT+ G V+VL +D+ +Y GE VAI+GASGSGKSTL+++LG LD Sbjct: 12 NETPLIELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDR 71 Query: 67 PSTGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRD 126 P+TG+ +G+D + G ER LR GFV+Q ++L+ SA +NV +P M + Sbjct: 72 PTTGSYYFMGRDVSDFGRDERALLRRDDFGFVFQSYNLIASASAAENVEVPAMYSGLPPA 131 Query: 127 QAQEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRST 186 + +A+ +L ++GLA R H P +LSGG++QRV+++RAL+ +LADEPTG LD + Sbjct: 132 ERHARAQALLTELGLADRSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKS 191 Query: 187 ADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSD 226 +L+ +LS G +++TH E+A R++ + D Sbjct: 192 GQDVMKLLADLS-ARGHTVLLITHAKEVADHAQRLIEIKD 230 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 164 bits (415), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 134/220 (60%) Query: 7 NRQAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDT 66 +R + + ++ +GK F +G + V D+Y GE + IVG SGSGK+TLL ++ G+ Sbjct: 36 HRVSAIRAQNVGKWFGEGDARTMAVNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILK 95 Query: 67 PSTGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRD 126 P+ G+V + G+D L + + R ++GFV+Q +HL P + +NVA+PL++++ K Sbjct: 96 PNEGSVIVKGQDLWQLSKDDLADFRLNTIGFVFQDYHLFPRLTTAENVAIPLILKKNKWG 155 Query: 127 QAQEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRST 186 A +A++ L+ VGL +RV VP +LSGGE+QRVA+ARA+V+ P+ ++ DEPT +LD T Sbjct: 156 DAITEAKKYLDIVGLKERVDIVPVKLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDT 215 Query: 187 ADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSD 226 + + + T +IVTHD + RI+ + D Sbjct: 216 GRKILAFVHDQILNEKTCILIVTHDTRIFEFADRIMYMED 255 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 131 bits (329), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 15 RGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSL 74 R + K + Q +V L+++ + V GE V + G SG+GKSTLL ++ ++ PS GTV + Sbjct: 5 RQVSKKYAQ---NVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVIV 61 Query: 75 LGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQARE 134 D + S LR ++LG ++Q LL + S L NV +PL++ R A+ +AR Sbjct: 62 SDHDIGRIKNSGLPYLR-RNLGLIFQQQRLLSDRSVLANVMLPLIVCGAARADAERRARA 120 Query: 135 MLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELM 194 L+KVGL + + P LSGGE+QRV++ARA+V +P +LADEPT NLDR +A++ + + Sbjct: 121 ALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDAL 180 Query: 195 IELSRTLGTAFVIVTHDIELAGRCGRILRLSDQGLRVASQR 235 + +G +I THD + R++ L D G + S R Sbjct: 181 -KAFHAVGVTCLISTHDEQFLDTATRVIYL-DHGKIIESWR 219 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 430,035 Number of extensions: 17979 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 49 Length of query: 236 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 157 Effective length of database: 740,042 Effective search space: 116186594 Effective search space used: 116186594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)