BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2781.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095405|ref|YP_001100480.1| TatD family hydrolase [Herminii...   321   2e-89
gi|134094624|ref|YP_001099699.1| metallo-dependent hydrolase [He...    97   1e-21

>gi|134095405|ref|YP_001100480.1| TatD family hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  321 bits (823), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/251 (67%), Positives = 196/251 (78%)

Query: 1   MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60
           MW+DTHCHLDA EF     AVA  A + GV  IVIPA+AR NF+ VA LA    N  YAL
Sbjct: 1   MWIDTHCHLDAAEFAAEEDAVAASALRQGVTMIVIPAVARDNFATVAALAHRHVNCTYAL 60

Query: 61  GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120
           GIHP++VP A+  DL  +R A+ AA++D  FV IGEIGLDFFVPAL    +REKQEFF+ 
Sbjct: 61  GIHPIFVPQAQEDDLAAMRAAVEAAMNDSRFVAIGEIGLDFFVPALTSPAMREKQEFFYV 120

Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVPGGIAHAFNGSHQQAENFVELGLHLGF 180
           EQLK+ARDF LPVLLHVR+SQD ILKYLRRI+V GGIAHAFNGS QQAE F+ LG  LGF
Sbjct: 121 EQLKIARDFGLPVLLHVRKSQDSILKYLRRIKVAGGIAHAFNGSVQQAETFMALGFKLGF 180

Query: 181 GGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELRQ 240
           GGAMTF R+LQIRRLAA LPL+SIVLETDAPDISPAWLHP  N+P+Q+ RIG +LAELR+
Sbjct: 181 GGAMTFTRALQIRRLAATLPLASIVLETDAPDISPAWLHPQRNSPEQLARIGQILAELRE 240

Query: 241 LSLTEVATTTT 251
           +  T +A  T+
Sbjct: 241 MPATAIAEITS 251


>gi|134094624|ref|YP_001099699.1| metallo-dependent hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 15/218 (6%)

Query: 42  NFSQVAQLARELGNAVYALGIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDF 101
           NF  V +LA    N   ++G+HP Y  T EP+  D++R +     D P  V IGE GLD+
Sbjct: 25  NFPGVLELAERYPNIYASVGVHPDYEDTPEPSVDDLIRLS-----DHPKIVAIGETGLDY 79

Query: 102 FVPALKEDPLREKQEFFFAEQLKLARDFDLPVLLHVRRSQDIILKYLRR------IRVPG 155
           +   L+ D   E Q   F   ++ +R    P+++H R + +  ++ +R            
Sbjct: 80  Y--RLEGD--LEWQRERFRRHIRASRATGKPLIIHTRAASEDTIRIMREEGAGTDAGGAA 135

Query: 156 GIAHAFNGSHQQAENFVELGLHLGFGGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISP 215
           G+ H F  S + A+  +E+G ++ F G +TF  +  ++ +A E+PL  +++ETD+P ++P
Sbjct: 136 GVMHCFTESLEVAKAAMEMGFYISFSGIVTFKSAKDLQSVAREVPLEQMLIETDSPYLAP 195

Query: 216 AWLHPDTNTPDQIPRIGAVLAELRQLSLTEVATTTTAN 253
                  N P  +  +   LA L+ + L  +A  TT N
Sbjct: 196 VPHRGKVNEPGLVRHVAEYLALLKDVPLERIAQQTTDN 233


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 477,607
Number of extensions: 19375
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)