BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2780.p (829 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095374|ref|YP_001100449.1| putative DNA internalization-re... 665 0.0 gi|134095404|ref|YP_001100479.1| putative DNA internalization-re... 226 3e-60 >gi|134095374|ref|YP_001100449.1| putative DNA internalization-related competence protein ComEC/Rec2 (partial) [Herminiimonas arsenicoxydans] Length = 552 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/560 (62%), Positives = 426/560 (76%), Gaps = 9/560 (1%) Query: 269 VFNRTGIGHLMAISGLHITMLAALCGGLAGWLWRRSFFTGAQLPLRLPAQKVAVIAGMVT 328 +FNRTGI HL++ISGLHITM+AAL GL LWRRSFFT A+LPL LPAQK A +AGM+ Sbjct: 1 MFNRTGISHLISISGLHITMVAALFSGLIFALWRRSFFTTARLPLMLPAQKAAALAGMLA 60 Query: 329 ALLYVLLAGFGVPAQRTLYMLIVVGIAFWRGRIVRVSVVQCLALALVLLLDPWAVLWPGF 388 A +YVLLAG GVPAQRTL ML VV +A W GRI VS V CLAL LV+L DPWAVL PGF Sbjct: 61 ATVYVLLAGSGVPAQRTLLMLTVVALALWWGRITSVSHVLCLALGLVVLFDPWAVLGPGF 120 Query: 389 WLSFGAVALLLYGSVGRMQPPRAMAAAAARKHWWPALLQRIKEASHAQYVVTLGLVPLTM 448 WLSF AVA++LY SVGR A A A K W A LQ A+ QY VTLGLVPLT+ Sbjct: 121 WLSFAAVAVILYVSVGR-----AAANGDAGKLRWRAALQ---SATLTQYAVTLGLVPLTV 172 Query: 449 LLFGQYSLVSPIANAIAIPLVSLVITPLALVGSILPTVLAQFVLQVPHQLLSWLADFLQT 508 LLFGQ SLVSP+ANA+AIPL S ++TPLAL+GS+LP L+ + L H L++ LA L Sbjct: 173 LLFGQASLVSPLANAVAIPLFSFLVTPLALLGSVLPAPLSFWCLGFAHFLVAELAQVLNW 232 Query: 509 LNAMPWAVWQTPLPSWWMFALALGGTLLVLAPRGWPVRWLGLFGWLPLLLNTPLGPAEGT 568 L+ AVW P+P WMFALAL GT+ +LAPRGWP R+LGLF WLPL+LN P P G Sbjct: 233 LSGFSLAVWTVPIPDAWMFALALIGTIWMLAPRGWPARYLGLFAWLPLVLNAPAHPRAGE 292 Query: 569 MRVTAFDVGQGMAVLVETPGHRLLYDTGPYYTAESDGATRVILPYLRAHGIDHLDRVVIS 628 M VTAFDVGQGMA+L+ET HR LYDTGP Y+ ESDG RVILPYLRA GI+ LD ++I+ Sbjct: 293 MWVTAFDVGQGMALLIETEKHRFLYDTGPTYSPESDGGNRVILPYLRARGINTLDGIMIT 352 Query: 629 HNDNDHSGGALSLFKSLSVDSVYSSLSPDSRILRSAPVNTRCQAGQTWNWDGIGFTVLHP 688 H+D DH+GGALS+ + + V V SSL + I+R+AP++ RC AGQ+W+W+G+ F +LHP Sbjct: 353 HSDTDHAGGALSIMREIRVGRVSSSLPLEHPIVRAAPLHERCIAGQSWHWEGVDFALLHP 412 Query: 689 AAASYDSDKWRPNARSCVLKVQIGRQSVLLTGDIEATQEDELVNGPLADRLPSTVLLAPH 748 AASYDS+KW+PNARSC LKV + ++LL GDIEA QE ELV G A+ L + VLLAPH Sbjct: 413 TAASYDSEKWKPNARSCTLKVTLNGLAILLPGDIEAVQEAELVAGKGAE-LAADVLLAPH 471 Query: 749 HGSGTSSTEPFLRAVRPELVVFQVGYRNRFNHPKPEVYERYGRLGIRRLRTDESGALTMT 808 HGSGTSST PFL+AV+P+L +FQVGYRNR+ HPK EV+ERYG LGI RLR+DE+GA+++ Sbjct: 472 HGSGTSSTLPFLQAVQPQLALFQVGYRNRYRHPKQEVFERYGELGIGRLRSDEAGAISLR 531 Query: 809 LGDQLQVEQYRKQHARYWYG 828 G ++V +YR++HARYWYG Sbjct: 532 FGSAIEVIEYRREHARYWYG 551 >gi|134095404|ref|YP_001100479.1| putative DNA internalization-related competence protein ComEC/Rec2 (partial) [Herminiimonas arsenicoxydans] Length = 248 Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 161/264 (60%), Gaps = 17/264 (6%) Query: 1 MRALIIGFAIGVGLLQVQGQLPGLEWYGVGLVLAALLAFTAWKFWQPFLRVPVLLTCGAW 60 MR+ I+G +G LQVQ LP +A LLA A + R+P+ GA Sbjct: 1 MRSAIVGLVVGAAWLQVQASLPHYSIIAFLFAVACLLAVMARRSSLHRFRIPLFAGMGAL 60 Query: 61 LGFLWAASFALYYLDQELPSAWEGRDITVIGTVADLPVHNDQGVRFRFDVEQVVLQSGIK 120 LGF+WAA FA YYL ELP EGRDITV+GT+ +P + ++GVRF F VE+V+ G+ Sbjct: 61 LGFVWAALFAQYYLAAELPKNLEGRDITVVGTIDSMPAYFERGVRFNFAVEKVLPLEGVT 120 Query: 121 PPVPPRLALSWYGNQRYQQPTEDGEQASPAPLAVPDLRPGERWRLQVRLKRPHGNANPDG 180 P +P RLALSWY + E + D++PGERW+L VRL+RPHGNANP G Sbjct: 121 PVIPSRLALSWYAAFHADEVQE-----------LADVQPGERWQLTVRLRRPHGNANPHG 169 Query: 181 FDYELSLLQDDVRATGYVVGRPAAASAPATALNRRIDTFVWTPSHVIDSARGWLRDRIYT 240 FDYE+ LL+ +VRATGY+ RP N R+D FV++ +++++ R LR+R+ Sbjct: 170 FDYEMWLLEQNVRATGYI--RPDQTGLK----NVRLDNFVFSFNNIVERCRSRLRERVQN 223 Query: 241 ALPDAPYAGVIAALVMGDQRGIRQ 264 L D PYAGVI ALV+GDQR I Q Sbjct: 224 ILRDRPYAGVIVALVVGDQRAISQ 247 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.139 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,485,307 Number of extensions: 58751 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 2 Length of query: 829 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 739 Effective length of database: 703,797 Effective search space: 520105983 Effective search space used: 520105983 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)