BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2778.p
         (550 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095373|ref|YP_001100448.1| CTP synthetase [Herminiimonas a...   998   0.0  

>gi|134095373|ref|YP_001100448.1| CTP synthetase [Herminiimonas
           arsenicoxydans]
          Length = 552

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/549 (88%), Positives = 517/549 (94%)

Query: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF 60
           MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSP QHGEVF
Sbjct: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPFQHGEVF 60

Query: 61  VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN 120
           VT+DGAETDLDLGHYERFI+AKM+KVNNFTTGQ+YESVIRKERRGEYLGKTVQVIPHITN
Sbjct: 61  VTEDGAETDLDLGHYERFITAKMRKVNNFTTGQIYESVIRKERRGEYLGKTVQVIPHITN 120

Query: 121 EIQEFIHRGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA 180
           EIQ++I+RGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLR+GRNA AFVHLTLVP+L 
Sbjct: 121 EIQDYIYRGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLRAGRNAAAFVHLTLVPYLV 180

Query: 181 SAGELKTKPTQHSVQKLREIGISPDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA 240
           SAGELKTKPTQHSVQKLREIGISPDALLCRADR IPDDER KISLFSNV  DAVISVWDA
Sbjct: 181 SAGELKTKPTQHSVQKLREIGISPDALLCRADRPIPDDERAKISLFSNVPEDAVISVWDA 240

Query: 241 DTIYKIPQMLHDQGLDTIICEKLGLSPKPADLSMWDKLIDAQNNPSHEVTIGMVGKYVDL 300
           DTIYKIPQML+DQGLD I+CEKL LSPKPADLS+W KL+ A  NP H VTIGMVGKYVDL
Sbjct: 241 DTIYKIPQMLYDQGLDRIVCEKLALSPKPADLSVWTKLVHALENPKHSVTIGMVGKYVDL 300

Query: 301 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDTLRKYDAILVPGGFGKRGVEGK 360
           TESYKSLTEALRHAGIHT SRVNIEYLDSEEIEA+G   L KYDAILVPGGFGKRGVEGK
Sbjct: 301 TESYKSLTEALRHAGIHTESRVNIEYLDSEEIEASGPQCLAKYDAILVPGGFGKRGVEGK 360

Query: 361 IAAARYARENKVPYLGICLGMQVALLEYARNKAGLTKANSTEFDPDTEQPVVALIDEWQN 420
           IAAAR+ARE+ +PY GICLGMQVAL+EYARN AGLTKANSTEFDPDTEQPVVALI+EWQN
Sbjct: 361 IAAARFAREHAIPYFGICLGMQVALIEYARNVAGLTKANSTEFDPDTEQPVVALINEWQN 420

Query: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYLGRVE 480
           HDGKVERRD NSDLGGTMRLG+QTCAVKPGTLAAEIYG+ VTERHRHRYEANN YLGRVE
Sbjct: 421 HDGKVERRDLNSDLGGTMRLGSQTCAVKPGTLAAEIYGNEVTERHRHRYEANNHYLGRVE 480

Query: 481 EAGMIVSARTPSEDLCEIMELPRTGENAHPFYIGVQYHPEFKSTPRDGHPLFISYIRAAL 540
           EAG+IVSARTP+E LCEIMELPRTGE+AHP+Y+GVQYHPEF STPRDGHPLFIS+I+AAL
Sbjct: 481 EAGLIVSARTPAESLCEIMELPRTGEHAHPWYVGVQYHPEFNSTPRDGHPLFISFIKAAL 540

Query: 541 AHHAASKGQ 549
           AH  A + +
Sbjct: 541 AHKQAEESK 549


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,070,893
Number of extensions: 46413
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 464
Effective length of database: 716,977
Effective search space: 332677328
Effective search space used: 332677328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)