BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2774.p (537 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [... 503 e-144 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 134 9e-33 gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [... 127 1e-30 gi|134094024|ref|YP_001099099.1| putative GGDEF family protein [... 125 5e-30 gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [... 117 1e-27 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] Length = 524 Score = 503 bits (1295), Expect = e-144, Method: Compositional matrix adjust. Identities = 274/530 (51%), Positives = 366/530 (69%), Gaps = 11/530 (2%) Query: 1 MSKKPTTLTPVEIAREAFQRLGARRIAPTPDAYRIAYEEIQGDLPGVSAESVMDNFATRL 60 M KPT P EIAREAF++L R+IAPTPDAYR Y+EI G SAE V+ FA L Sbjct: 1 MPDKPTQ-NPAEIAREAFRQLATRKIAPTPDAYRKIYDEIAGYAIQPSAEEVLGEFAGTL 59 Query: 61 SRQPGENGLLGTRLVRARENGDWSSFER---QLIEFAEANWQSRPAAPPAPVVPHGELVP 117 P + LG L A W F + QLI+ + +R + G +P Sbjct: 60 LSAP-DLAPLGKALQEAAATSYWPDFSKGLEQLIKHYQTQLSARSTTVSSTNNVAGSTLP 118 Query: 118 IDLERQFIRDSKKEKMLREMLVRVLVFNLPSLLSTAPELANESRNSGQELKMAFSEQSMN 177 + D + +LR++L+R L + SLL APELA ES G+ +K A SE ++N Sbjct: 119 ------SLIDDPQPALLRDLLMRTLTLAVASLLQGAPELAEESEALGRSIKEAQSEAALN 172 Query: 178 DIIARVKQLSFQIELKTDDMAQQQELLMRLFQLLLENINGLLEQGSWLSSQIETVQSLIA 237 ++ R+KQL F+IELK+ DMA+Q ELL+RLF+LLLENI+GL++ SW+ QIE VQ+LI Sbjct: 173 EVSVRLKQLCFKIELKSGDMAEQHELLLRLFKLLLENISGLIDDDSWMHGQIEAVQNLII 232 Query: 238 GPLSSTSLADATKNLKEVIYKQGLLKNTLSEEKVVVKNMMLTFVDRLSAMVSTTDNYQRT 297 GP++ +L + ++LKEVIYKQG L+N+L E K VK+MM+TF+DRL + +TT NY + Sbjct: 233 GPINDIALREVMRSLKEVIYKQGTLRNSLVEAKDTVKDMMITFIDRLGEIATTTGNYHKK 292 Query: 298 IRGFSQQISQAGNIADLNSVLSEIMTETQKAQEEATRSRDAMEDARQEVEKAEDRIHALE 357 I +S+QI +++ L+ +L E+M ET+ AQ EA RSRDA+ AR+ VE AE RIH LE Sbjct: 293 IDKYSKQIIATADVSKLSKILDEVMKETRIAQSEALRSRDAILAARKNVEDAEARIHNLE 352 Query: 358 QQLLQMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHG 417 +L QM ELVREDQLTGSLNRRG+++ +RE+A A RR TPLC+A+LDLDDFK+IND +G Sbjct: 353 TKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDDFKKINDKYG 412 Query: 418 HATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRI 477 H+ GDE L+HLV+VI+ETLR +DVIARFGGEEF++++P+T +AVQ +TR+QRELTK+I Sbjct: 413 HSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTRLQRELTKQI 472 Query: 478 FMHESQRLLITFSAGLALYYPGESQAELLKRADVALYKAKNAGKNRIVFA 527 FMH RLL+TFSAG+AL E Q +++RAD ALY+AK GKNR+V A Sbjct: 473 FMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRVVAA 522 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 4/168 (2%) Query: 362 QMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATG 421 ++ E D LTG+ NRR DE+ E A A R+ PL VA LD+D FK++NDT+GHA G Sbjct: 303 ELEEKTHRDVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHAAG 362 Query: 422 DEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHE 481 D+ L+ L ++I +R D+ R+GGEEFV+L P T ++A+ ++ R+++ + ++ Sbjct: 363 DKALIALSRIIATQIRGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIRQAVASYCHTYD 422 Query: 482 SQRLLITFSAGLALYYPGESQAE----LLKRADVALYKAKNAGKNRIV 525 + +T SAGLA + + + E LL+ AD ALY AK G+N+I+ Sbjct: 423 TATFHLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGRNQII 470 >gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [Herminiimonas arsenicoxydans] Length = 412 Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 106/190 (55%), Gaps = 8/190 (4%) Query: 351 DRIHALEQQLLQMGELVRE-------DQLTGSLNRRGMDESLDREIANALRRETPLCVAL 403 DR+ L L + +R D L G NRR + +L+++ A TPLC+A+ Sbjct: 221 DRVQRLHNALFKANRKIRNIEEDAQRDALLGCFNRRYIVAALEQQKRLADDAGTPLCLAV 280 Query: 404 LDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAV 463 +DLD FKRIND GH GDEVL ++ ++ +R D+ R+GGEEF++++P+T A+ Sbjct: 281 IDLDHFKRINDEAGHLGGDEVLRTFARIAQDNVRAGDIFGRYGGEEFLLVLPDTSLLAAL 340 Query: 464 QIITRVQRELTKRIFMHESQRLLITFSAGLALYYPGESQAELLKRADVALYKAKNAGKNR 523 + R+ RE +R + R +T S GL PGES +L R D A+Y AK G+N+ Sbjct: 341 NVAERI-REQVERFAWDKKLRNRVTVSIGLTQQIPGESVLDLFSRTDTAMYMAKQGGRNQ 399 Query: 524 IVFAEPPPAA 533 +V EPP A Sbjct: 400 VVVEEPPADA 409 >gi|134094024|ref|YP_001099099.1| putative GGDEF family protein [Herminiimonas arsenicoxydans] Length = 300 Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 99/175 (56%), Gaps = 4/175 (2%) Query: 354 HALEQQLLQMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRIN 413 H LE +L EL DQLTG NRR ++ L A++ R P + + DLD+FK+IN Sbjct: 129 HILEDRLR---ELSDTDQLTGLFNRRKLEHDLTLHYASSARYSVPTSIFMFDLDNFKKIN 185 Query: 414 DTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQREL 473 DT GH GDE++ + + R +R+ D RFGG+EFVV +P T + A+Q R+ Sbjct: 186 DTKGHHAGDEIIQAVANICRSAIRKTDTAYRFGGDEFVVALPSTGREQAMQFAKRLHDRF 245 Query: 474 TKRIFMHESQRLLITFSAGLALYYPGE-SQAELLKRADVALYKAKNAGKNRIVFA 527 K + + ++T S G+ + P + S + LKRAD ALY+ K+ GK+RI A Sbjct: 246 RKELSRFSVEGTVVTVSIGVTIITPEDRSYEDTLKRADRALYEVKSMGKDRIFSA 300 >gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas arsenicoxydans] Length = 361 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 7/162 (4%) Query: 365 ELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEV 424 L D+L+ NRR + + +RE+ ++R + L +A +D+D FKR ND GHA GD V Sbjct: 201 HLATHDELSKLFNRRAIVAAGERELYLSIRLQRDLAIAFIDIDLFKRFNDEFGHAAGDTV 260 Query: 425 LVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQR 484 + + V+++T R +D++ R+GGEEF+V++P + Q AVQI R+ + + F+ Sbjct: 261 IAEVAAVLQQTCRSIDMVGRYGGEEFLVILPGVDSQSAVQIGQRLVEAMREYRFLGIHP- 319 Query: 485 LLITFSAGLALYYPGE---SQAELLKRADVALYKAKNAGKNR 523 +T S G+A+ P S A+LL+RAD ALY+AKN G++R Sbjct: 320 --VTISIGMAI-LPRNAECSWAQLLRRADAALYEAKNMGRDR 358 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 843,345 Number of extensions: 31184 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 31 Length of query: 537 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 451 Effective length of database: 716,977 Effective search space: 323356627 Effective search space used: 323356627 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)