BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2773.p (217 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg... 334 2e-93 gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon... 213 9e-57 gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regula... 77 5e-16 gi|134093850|ref|YP_001098925.1| putative two-component system r... 76 1e-15 gi|134096209|ref|YP_001101284.1| response regulatory protein [He... 68 4e-13 >gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 215 Score = 334 bits (856), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 158/210 (75%), Positives = 192/210 (91%) Query: 8 AIKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDR 67 AIKVLIADDHAIVREGL+QI A ++DIVVAG+A NG EAI+L+REG +V+LLDI +PDR Sbjct: 6 AIKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDR 65 Query: 68 NGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAA 127 +GI++LKQ+RKE P++ +L+LS+HREDQYAIR+LKAGAAG+LNKQ++P+E++ AIRQ AA Sbjct: 66 SGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQVAA 125 Query: 128 GRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTI 187 GRKY+S LAQELANQI +H+TPLHETLSDREYQT+ MIASGKTVSDIAAEL+LSVKTI Sbjct: 126 GRKYISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELVLSVKTI 185 Query: 188 SMYRSRVLAKMKMRHNAELTHYALKNDLVE 217 SMYRSR+L KMK+RHNAELTHYA+KN LV+ Sbjct: 186 SMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] Length = 210 Score = 213 bits (541), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 99/209 (47%), Positives = 150/209 (71%) Query: 9 IKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDRN 68 IK+L+ DDHA+VR G++ A D+ + G AA EAI+L R D D++LLDI +PD++ Sbjct: 2 IKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKS 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAAG 128 G+++LKQI++E+PELPVLILS+H E +YA++ L++GA+G++ K+A E++ AI+ G Sbjct: 62 GVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTILRG 121 Query: 129 RKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTIS 188 KY+S ++A+ L ++ + D PLHETLS REY+ + G V+ IA EL LSVKT+S Sbjct: 122 HKYISHTVAELLTAEVDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVS 181 Query: 189 MYRSRVLAKMKMRHNAELTHYALKNDLVE 217 YR+RVL KM M +NA + +YA+K +L++ Sbjct: 182 TYRARVLQKMNMENNAGIIYYAIKQNLID 210 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 77.4 bits (189), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 113/211 (53%), Gaps = 4/211 (1%) Query: 5 ATAAIKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVL 64 A I VL+ DDH + R G+R + + V G AA+G+E IK AR+ DV+LLD+ + Sbjct: 14 APPPISVLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQLQPDVVLLDLNM 73 Query: 65 PDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQ 124 P +G+ L+ + ++ P V++L++ + + AL++GA G+L K ++ AI++ Sbjct: 74 PGISGLQTLQLMLQDCPNTAVIMLTVSEDAEDLGVALQSGARGYLIKNIDADYLVRAIQR 133 Query: 125 AAAGRKYVSPSLAQELANQI-GFDHDTPLH---ETLSDREYQTMVMIASGKTVSDIAAEL 180 AAAG V+ ++ +L Q+ T + + L+ RE + +A G++ IA L Sbjct: 134 AAAGEAVVAEAMTSKLIAQLQNAGQRTEVRSELDKLTPRERDILACLARGESNKLIARTL 193 Query: 181 LLSVKTISMYRSRVLAKMKMRHNAELTHYAL 211 ++ T+ ++ +L K+ + + +A+ Sbjct: 194 DVADSTVKIHVQNILKKLNLSSRVQAAIFAV 224 >gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 11/221 (4%) Query: 4 KATAAIKVLIADDHAIVR---EGLRQICAVSKD-IVVAGNAANGLEAIKLAREGDGDVML 59 ++T VL+ +D ++R EGL S D +V+ G+ A EA + L Sbjct: 14 ESTLLAPVLLVEDEPLIRRRLEGLLLQLGYSSDALVMTGSLA---EARACMVNQPIALAL 70 Query: 60 LDIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVI 119 +D+ LPD +GID++ ++ P LP+L++S + + AL+AGA G++ K+ EV Sbjct: 71 VDLGLPDGSGIDLIAEMHMADPALPILVISAWSTEDAILAALRAGATGYVLKERDDMEVA 130 Query: 120 AAIRQAAAGRKYVSPSLAQELANQI---GFDHD-TPLHETLSDREYQTMVMIASGKTVSD 175 +IR G + P +A+ + +++ H+ P +ETLS RE + + ++A G + Sbjct: 131 LSIRSVLRGGAPIDPFIARRIIDELRPKTMPHEKAPNNETLSPRESEILGLVAQGLANRE 190 Query: 176 IAAELLLSVKTISMYRSRVLAKMKMRHNAELTHYALKNDLV 216 I+ +L LS TI + + K+ + + H A L+ Sbjct: 191 ISEQLHLSRYTIECHIKHIYRKLAVSSRTKAIHEARSRGLL 231 >gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans] Length = 238 Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 11/173 (6%) Query: 56 DVMLLDIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASP 115 DV+L+D+ LPD +GIDI++ P +++++ + + +++AGA+G++ K A P Sbjct: 58 DVLLVDLGLPDGSGIDIIRFCADRHPSCNIMVITTSSDQGSVVDSIEAGASGYVLKDAGP 117 Query: 116 SEVIAAIRQAAAGRKYVSPSLAQELANQI--GFDHDTPLHET---------LSDREYQTM 164 ++ A+ + AG +SP +A+++ ++ G D + L+ RE + Sbjct: 118 LDIGRALMELHAGGSPISPVIARKVLARMRDGNKADGAVRAENAPGGQKVFLTRREATIL 177 Query: 165 VMIASGKTVSDIAAELLLSVKTISMYRSRVLAKMKMRHNAELTHYALKNDLVE 217 +IA G + ++A EL LSV T+ + + K+ + + A + L++ Sbjct: 178 DLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVHSRGAAVYEAHRRGLLQ 230 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 374,266 Number of extensions: 14454 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 12 Length of query: 217 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 139 Effective length of database: 743,337 Effective search space: 103323843 Effective search space used: 103323843 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)