BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2772.p (233 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [... 129 2e-31 gi|134095694|ref|YP_001100769.1| putative regulator protein [Her... 100 6e-23 gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/... 81 5e-17 gi|134093849|ref|YP_001098924.1| hypothetical protein HEAR0597 [... 59 2e-10 >gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [Herminiimonas arsenicoxydans] Length = 478 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 2/208 (0%) Query: 24 SQVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQ 83 + + ++E+ER+ IAR++HD+LG L+ + MAL L +L ++ + +ADY + L+ + Sbjct: 269 AHIDIVKEQERTHIAREIHDDLGGNLTAIKMALALLTRRLPRKNVELIEKADYVESLVDR 328 Query: 84 ASQGMERIIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLSLL 143 + + RI +L P I++FGLV A+ WQ R F +Q G+ C+ + T +L Sbjct: 329 TIESVHRIAGNLRPGILDFGLVAAIDWQGREFEKQVGIPCQFSSNKTEIDLALDQATALF 388 Query: 144 RILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMR 203 RI +EAL N A+HA A + V+L + ++L + D+G G R G+ M Sbjct: 389 RIFQEALTNIAKHAKASLVTVQLVHTRQYVRLEIVDNGRGI--QMTDRNKPKSFGIRGMV 446 Query: 204 QRAQALGGSLVLEARAGGGTLVRLEMPV 231 +R+ A+GGSL + GGT+V + +P+ Sbjct: 447 ERSIAMGGSLSVSTAPKGGTIVAINVPL 474 >gi|134095694|ref|YP_001100769.1| putative regulator protein [Herminiimonas arsenicoxydans] Length = 700 Score = 100 bits (249), Expect = 6e-23, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 14/212 (6%) Query: 25 QVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQA 84 ++ REEE+ IAR+LHD+LGA L+ L M L + +Q+ E + ++ + LL Sbjct: 479 HLETTREEEKRAIARELHDDLGAALTALNMHLSLIFQQMPAEPK-FTERSVKIKALLSSI 537 Query: 85 SQGMERIIDDLHPPIVE-FGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEF-----V 138 + RI + L P ++ FG+ A+ Q F + +G+ C + P+D+ V Sbjct: 538 TDATRRIQNGLRPDKLDVFGIKIAIAEQAAEFEKYTGVVCNVNL-----PDDQLTYAARV 592 Query: 139 VLSLLRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQG 198 ++L RI++EALNN A+HA A H++V L ++ + L+V D+G G R I G Sbjct: 593 DIALFRIVQEALNNIAKHAKASHVDVVLDDTDDEIVLTVRDNGIGIPLSRP--NNMITHG 650 Query: 199 LANMRQRAQALGGSLVLEARAGGGTLVRLEMP 230 L MR+R LGG++ + G GT + + +P Sbjct: 651 LRGMRERVAYLGGTVRIGGAEGKGTTIVVTIP 682 >gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/nitrite sensor kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 672 Score = 80.9 bits (198), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 2/202 (0%) Query: 32 EERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQL-LQQASQGMER 90 EER+ +A+ LHD + L+ L + + L + L + + +A+ A + + ++ + + Sbjct: 467 EERNLVAQGLHDSIAQGLTFLNLQVQMLDDSLQKGRLKEVAEIVPALRAGVNESYEDIRE 526 Query: 91 IIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLSLLRILREAL 150 ++ + +++ L+++L F RQSG+ P L ++ I++EAL Sbjct: 527 LLLNFRSRLIKGDLINSLQTTIDKFRRQSGITVNFVASGDGAPLPYEQQLQIMFIVQEAL 586 Query: 151 NNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMRQRAQALG 210 +N +HA A +E+RLQ D + LS+ D+G GFD D G G+ MR+RAQ + Sbjct: 587 SNIRKHASASKVEIRLQ-DNQDFSLSIHDNGGGFDADTLLSKGESHVGINIMRERAQRIH 645 Query: 211 GSLVLEARAGGGTLVRLEMPVA 232 S + + GT VRL++ A Sbjct: 646 ASFEVHSTPLQGTTVRLQLARA 667 >gi|134093849|ref|YP_001098924.1| hypothetical protein HEAR0597 [Herminiimonas arsenicoxydans] Length = 650 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 45/217 (20%) Query: 30 REEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQA---DYAQQLLQQASQ 86 R +ER +I+ DLHD LG L + + Q L ++ L + D Q + +S Sbjct: 448 RLQERLQISHDLHDGLGGSLVRMMAMVEQADTPLQNQQFLSLLKLIRDDLRQTIDTGSST 507 Query: 87 GME-----------------RIIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDC 129 G++ +++DDL +E WQ ++ + L+C Sbjct: 508 GVKVPATPGEWIAPLRHRFMQLLDDLE---IEASWAVPAQWQ----TQPNALQC------ 554 Query: 130 TLQPEDEFVVLSLLRILREALNNAARHAHARHIEVRL-QVDEERLQLSVADDGSGFDPDR 188 L+L R++ EA+ N +H+ A H+ +R+ Q + E L L + DDG GFD D Sbjct: 555 ----------LALTRLVEEAMINIVKHSRAPHVHMRMWQAETELLTLQIEDDGVGFDVD- 603 Query: 189 APRGGRIGQGLANMRQRAQALGGSLVLEARAGGGTLV 225 A R I G+ +M+ R A+GG L +++ G L Sbjct: 604 AVRQAGISIGMRSMQARIAAVGGKLDVQSAPGRTVLT 640 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 376,136 Number of extensions: 12627 Number of successful extensions: 58 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 4 Length of query: 233 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 154 Effective length of database: 740,042 Effective search space: 113966468 Effective search space used: 113966468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)