BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2771.p (148 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094164|ref|YP_001099239.1| putative response regulator rec... 81 2e-17 gi|134094525|ref|YP_001099600.1| chemotactic response regulator ... 56 6e-10 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 56 8e-10 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 52 9e-09 >gi|134094164|ref|YP_001099239.1| putative response regulator receiver (Che-Y like) [Herminiimonas arsenicoxydans] Length = 148 Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 6 ILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLF-SPHAVDHPDTLPCLILLE 64 IL+ + +P E+ +L + L W +D + A++ +F + + P LI+L+ Sbjct: 10 ILLAEDTPTDAEMTLRALKKVGLVNNITWVKDGQEALDYIFRKGEFANRVNGDPTLIMLD 69 Query: 65 PRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDAREFM 124 ++P++ G+++L +++ TR +PVIM +S +E D R + G N Y+VKPV++ +F Sbjct: 70 LKMPKVNGLEVLKAIKTTESTRIIPVIMLTSSAEEPDIVRCYEHGVNSYIVKPVESDKFF 129 Query: 125 ELINQTVAHW 134 E +++ +W Sbjct: 130 EEVSKAGFYW 139 >gi|134094525|ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 121 Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%) Query: 49 HAVDHPDTLPC-------LILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEAD 101 AVD D L L+L + +PRM+G L+ LR+ P + +P+++ T + Sbjct: 31 EAVDGQDGLDKAQMQVFDLVLTDQNMPRMDGFSLIRALRALPTYQKVPILVLTTESSDEM 90 Query: 102 ATRSHAAGANDYLVKPVDAREFMELINQTVA 132 + AAGAN +LVKP D + E++ + + Sbjct: 91 KAKGRAAGANGWLVKPFDPQRLTEVVKKVIG 121 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 55.8 bits (133), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 12/127 (9%) Query: 3 RPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDH-PDTLPCLI 61 +P+IL+V+ P +EL F+L GW A + + A D LP LI Sbjct: 5 KPTILIVEDEPPIIELVTFTL------KGAGWNVTAVQT-----AGEAWDFIQQRLPQLI 53 Query: 62 LLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDAR 121 LL+ LP G+ LL +R+ LP+IM E D GA+DY+ KP R Sbjct: 54 LLDWMLPDQSGLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPR 113 Query: 122 EFMELIN 128 E IN Sbjct: 114 ELTARIN 120 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 52.4 bits (124), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 3 RPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCLIL 62 + +IL+V+ VEL RF+L + + A + + PH LIL Sbjct: 5 KATILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPH----------LIL 54 Query: 63 LEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDARE 122 L+ LP G+ LL +R R LP+IM E D GA+DY+ KP RE Sbjct: 55 LDWMLPDQSGLQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRE 114 Query: 123 FMELINQTVAHWLP 136 + + + H +P Sbjct: 115 LIARVTVLLKHKVP 128 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 294,225 Number of extensions: 11001 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 4 Length of query: 148 Length of database: 1,000,347 Length adjustment: 74 Effective length of query: 74 Effective length of database: 756,517 Effective search space: 55982258 Effective search space used: 55982258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)