BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2770.p (549 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 340 9e-95 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 326 1e-90 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 324 6e-90 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 320 1e-88 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 340 bits (872), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 247/563 (43%), Positives = 339/563 (60%), Gaps = 51/563 (9%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 ++I RL+LT+ + L+ GA G+ +Q L+ I +P ++++ + L + Sbjct: 5 ISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQA 64 Query: 61 RLAGYRLSVFANLADKSE--LQKAVDAANKSLDEEFAHY---------ER---DLIFDDQ 106 R AG L + SE L++A + +S +EE+ Y ER D + + Sbjct: 65 R-AGLNLVAMRPHEEGSERILKRAENFYLQS-EEEWKKYLSLPIETLEERKVADEVTAKR 122 Query: 107 DRALIQADQANIEVYRKALVPFFAAAYANDMEGVRASLQAGTP--LAISAAAAKKGFEDH 164 R L +A+Q I R N M + SL T + + +A G++D Sbjct: 123 IRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQDS 182 Query: 165 ILIGRKKIDAIKLESDEAYAFALRTMIAVIVVAVLLTGV--LGIQMLRIVIHSLGRIQQT 222 + F +IAV+ V + L GV ++R + L + Sbjct: 183 QTL-----------------FHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLH 225 Query: 223 FEHVSQTLDLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAG 282 F+ ++ DL+ + V+ +E+G K+ R+ + V+ R + +++ A +IAAG Sbjct: 226 FDTIASG-DLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAG 284 Query: 283 NADLSARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQV 342 N DLS+RTEQQAA+LEE+ASS+E+LTS V QNT+NARQAN+LA SAS +A +GG VV V Sbjct: 285 NLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDV 344 Query: 343 VDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 402 V+TM++IN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA Sbjct: 345 VNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 Query: 403 QRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQS 462 QRSAAAAKEIK LIDDSV+KV +G++LV +AG+TM+E+VDSV+RVT I++ I AS EQS Sbjct: 405 QRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQS 464 Query: 463 AGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRS 522 AGI QVN AI QMD+ TQQNAALVE+AAAAA +L+ QA L +VV+VF+L + P Sbjct: 465 AGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSAP--- 521 Query: 523 VDVTPATNRLPDAAAPVNPQALE 545 N +P A P+ALE Sbjct: 522 ------QNLVPQA----RPKALE 534 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 337 bits (863), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 218/404 (53%), Positives = 271/404 (67%), Gaps = 29/404 (7%) Query: 161 FEDHILIGRKKIDAIKLESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQ 220 FED + ++D I Y A +I + +VA+ L VL + R + L Sbjct: 172 FED----AKGRVDTI-------YQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAV 220 Query: 221 QTFEHVSQTLDLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIA 280 V+ DL+ + V+ DE G A + + ++ RS D++ A+ QIA Sbjct: 221 SVARLVASG-DLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIA 279 Query: 281 AGNADLSARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVR 340 +GN DLS+RTE+QA++LEE+ASS+E+LTS V QN +NARQAN+LA +AS +A +GG VV Sbjct: 280 SGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVS 339 Query: 341 QVVDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 400 +VVDTM+ IN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS Sbjct: 340 KVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 399 Query: 401 LAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVE 460 LAQRSAAAAKEIK LIDDSVDKV +GSKLV +AG+TM E+VDSV+RVT I+A I AS E Sbjct: 400 LAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQE 459 Query: 461 QSAGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL-----GSR 515 QSAGI QVNQAI QMDQ TQQNAALVEEAAAAA++L QA L V++F+L SR Sbjct: 460 QSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSR 519 Query: 516 TA--LPV--------RSVDVTPATNRLPDAAAPVNPQALEMEEF 549 A LPV R +PA ++ + PV+ + EEF Sbjct: 520 VATRLPVAASNAPATRQFAASPAPKKIANETRPVSGD--DWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 326 bits (836), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 203/350 (58%), Positives = 257/350 (73%), Gaps = 9/350 (2%) Query: 195 VVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPVPVERMDEIGHTAAAFNKL 254 V+A+LL ++ ++ + L + E V++ +R E DE G +A ++ Sbjct: 197 VIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRM 256 Query: 255 LARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVLQN 314 A +V V+ R TD++ A+ +IA+GN DLS+RTEQQA++LEE+ASS+E+LTS V QN Sbjct: 257 QANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQN 316 Query: 315 TENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIVDIIAVIDGIAFQTNILA 374 +N+RQAN+LA +AS +A +GG VV QVVDTM +IN+S++KIVDII VIDGIAFQTNILA Sbjct: 317 ADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILA 376 Query: 375 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAG 434 LNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI DSV+KV +GSKLV +AG Sbjct: 377 LNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAG 436 Query: 435 STMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQGTQQNAALVEEAAAAAQ 494 +TM EIVD V+RV I+A I AS EQS GI QVNQA+SQMDQ TQQNAALVEEAAAAA+ Sbjct: 437 TTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAE 496 Query: 495 ALQGQAEKLESVVAVFQLGS-----RTALPVRSVDVTPATNRLPDAAAPV 539 +LQ QA L V+VF++GS ++A P R+V T L AAPV Sbjct: 497 SLQDQARNLAEAVSVFRVGSGYATAQSAAP-RTVQSTAMHKPL---AAPV 542 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 324 bits (831), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 203/332 (61%), Positives = 240/332 (72%), Gaps = 13/332 (3%) Query: 231 DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSART 290 DL + V DE G A + +V+ VS R+ +++ A+ QIAAGN DLS+RT Sbjct: 234 DLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRT 293 Query: 291 EQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSIN 350 E+QA++LEE+ASS+E+LTS V QN +NARQAN+LA SAS +A +GG VV QVVDTM IN Sbjct: 294 EEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDIN 353 Query: 351 HSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 410 S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK Sbjct: 354 SSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAK 413 Query: 411 EIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQ 470 EIK LI DSVDKV GSKLV +AG TM E+V+SV+RVT I++ I AS EQSAGI QVNQ Sbjct: 414 EIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQ 473 Query: 471 AISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL-GSRTALP----VRSV-- 523 AI QMDQ TQQNAALVEEAAAAA++L QA KL V+VF+L G + P VR + Sbjct: 474 AIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPATKTVRKIAA 533 Query: 524 --DVTPATNRLPDAAAPVNPQAL----EMEEF 549 R A PV+P+A E EEF Sbjct: 534 AASHHAPAKRAIAAPTPVSPKAATGGDEWEEF 565 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 320 bits (819), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 198/376 (52%), Positives = 263/376 (69%), Gaps = 9/376 (2%) Query: 141 RASLQAGTPLAISAAAAKKGFEDHILIGRKKIDAIKLESDEAYAFALRTMIA--VIVVAV 198 R+ AG+P ++A ++ ++ +++G +D E A LR +A + + Sbjct: 135 RSPADAGSPERLAAFIYQQD-KNWVIVGDTYVDEFTHE-----ATVLRNFLAGAACIALL 188 Query: 199 LLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPVPVERMDEIGHTAAAFNKLLARI 258 LLT L + + V L + Q ++ T DL+ + +R DEIG A N + + Sbjct: 189 LLTACLYAGIRKTVTGPLAQATQLARQLA-TGDLTSRLETKRTDEIGLLLRAVNSIGQGL 247 Query: 259 VEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVLQNTENA 318 VV R T+++ R+IAAGN DLS+RTEQQA++LEE+AS++E++TS V +N NA Sbjct: 248 ANVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAMEEMTSTVKENAANA 307 Query: 319 RQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAA 378 QAN LA +A+ +A +GG+VV +VV TM+SIN SS+KI DII+VIDGIAFQTNILALNAA Sbjct: 308 EQANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVIDGIAFQTNILALNAA 367 Query: 379 VEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMS 438 VEAARAGEQGRGFAVVASEVR+LAQRS+AAA+EIK LI+DSV KV SGSKLV AG+TM Sbjct: 368 VEAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQSGSKLVAHAGATMD 427 Query: 439 EIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQG 498 E+V S+QRV I+ I+ AS EQS GI QVNQAI+QMDQ TQQNAALVE+AAA+A++LQ Sbjct: 428 EVVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAASAESLQN 487 Query: 499 QAEKLESVVAVFQLGS 514 Q +L +VV+VF + S Sbjct: 488 QTTELNNVVSVFTIKS 503 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 712,648 Number of extensions: 23714 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 15 Length of query: 549 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 463 Effective length of database: 716,977 Effective search space: 331960351 Effective search space used: 331960351 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)