BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2765.p
         (111 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094093|ref|YP_001099168.1| putative alkylphosphonate uptak...   178   7e-47

>gi|134094093|ref|YP_001099168.1| putative alkylphosphonate uptake
           protein PhnA [Herminiimonas arsenicoxydans]
          Length = 115

 Score =  178 bits (451), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 94/114 (82%), Gaps = 4/114 (3%)

Query: 1   MSTLPACPQCQSEFTYEDGGQFVCPECGHEWSAQAAPAEQV----RVWRDASGNVLQDGD 56
           MSTLPAC +C SE+TYED G ++CPEC HEW  Q A AE      +V+RD++GNVLQDGD
Sbjct: 1   MSTLPACSKCNSEYTYEDNGMYICPECAHEWPVQQAAAESAEEGGKVYRDSAGNVLQDGD 60

Query: 57  TVTVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           TVTVIKDLKLKG  G +K+GTKVKNIRLV+ DHDIDCKIDGFG+M LKTEFV+K
Sbjct: 61  TVTVIKDLKLKGSAGTIKVGTKVKNIRLVDSDHDIDCKIDGFGAMSLKTEFVKK 114


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 191,285
Number of extensions: 5540
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 41
Effective length of database: 769,697
Effective search space: 31557577
Effective search space used: 31557577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)