BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2763.p
         (349 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...    89   4e-19

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 142/325 (43%), Gaps = 79/325 (24%)

Query: 17  TLGTMTW--GEQNTE-AQAHAQLDYAVERGINLIDVAEMYPVPPKAETQGLTERYLGTWL 73
            LG  TW  G+  +  A+  A L   ++ G+ LID AEMY         G +E+ +G  +
Sbjct: 14  VLGQGTWYMGDHASRRAEEIATLRLGLDFGMTLIDTAEMY-------GDGASEKLVGEAI 66

Query: 74  KKSGKRDQLLIATKCTGPARKPHNPRHIRGGINDLDRKGLTEALHGSLERLQLDHVDLYQ 133
             +G+RD++ + +K       P N            R G   A   SL+RL  D +DLY 
Sbjct: 67  --AGRRDEVFLVSKVL-----PSNAT----------RHGTIAACERSLKRLGTDRIDLYL 109

Query: 134 LHWPDRSVNSFGQLGYQHVADETTVPIEETLKVLSEFVKAGKIRYIGLSNETAWGVAQFL 193
           LHW  R+                  P  ET+        AGKIR+ G+SN     + +  
Sbjct: 110 LHWRGRT------------------PFAETIAAFEALQDAGKIRHWGVSNMDVDDMREIA 151

Query: 194 RAAEQHGLERIVTIQNPYNLLNRSFEVNLAEFAHREQVGLLAYSPLAFGMLSGKYLDGAR 253
           RA+   G E +   Q  YNL  R  E +L   A +  + ++AYSP+              
Sbjct: 152 RAS---GGEAVAVNQVLYNLTRRGIEYDLLPQAQQRGLPIMAYSPI-------------- 194

Query: 254 PAGGRLTLFERFSRYTNPQAEGATAQYVALARQHGLDPAQMALAYVNSRPFLTSNIIGAT 313
              GRLT         +P+ +        +A +HG  PAQ+ALA+V  +P + + I  A+
Sbjct: 195 -EQGRLT--------ESPEVQD-------IADRHGASPAQIALAWVLRQPGVIA-IPKAS 237

Query: 314 TLEQLRSNIDSAQLQLSEEVLAGIE 338
           T   ++ N  +  ++L+ + LA ++
Sbjct: 238 TPAHVQQNRAALDIKLTAQDLAELD 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 665,693
Number of extensions: 27187
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 266
Effective length of database: 726,862
Effective search space: 193345292
Effective search space used: 193345292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)