BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2761.p (1066 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 395 e-111 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 375 e-105 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 373 e-104 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 372 e-104 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 363 e-101 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/667 (36%), Positives = 374/667 (56%), Gaps = 47/667 (7%) Query: 405 QPQQFEWVTVRRNKIIHTDVTLNRAEF--ERGYAIFAIL-------------RDISARKR 449 QP + V + H +V+ A F ER A++A L + + R R Sbjct: 287 QPDPYHHVFSVAGQTWHMEVSTPPAWFAMERSNALWAFLAGLFFTAAAAIYLQAVLDRSR 346 Query: 450 AELLQSEQNRVLHMVMADEDL--DTILNEIVGFA----DTQIPYGASSVMLVNEQASHFT 503 LQ ++ R + +A+EDL D + +A + I A+S+++++ +A H+ Sbjct: 347 RIQLQVDE-RTAQLRIANEDLSADIAARKRAEYALQLRERAIEASANSIIIISAEAPHYA 405 Query: 504 SVLSRRYPPRLLRALQGMPIRHGCGVAAEAALRRGPCIV--TDISRDPVTEHLRVLIDVE 561 R+ G +AE A+ C + TD+ + P E +R E Sbjct: 406 IEYVNPAFERI------------TGYSAEEAIGVNLCFLWGTDVDQ-PGIEEIRATASAE 452 Query: 562 IYPSCGAWPIMGKEGQLL--GVFAALLKENQAPSNEYLQLANIAADLASVAIESRRADER 619 K+G L ++ A +K++ + ++ + D+ + ++R + Sbjct: 453 -REGHAVLRNYRKDGTLFWSDLYIAPVKDDTGTVSHFIV---VQYDITA----TKRYESE 504 Query: 620 IRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGLVAVLLMDLDRFKNINDTFGHQAGE 679 + + D LTGL NR L + A+++A + +L +DLDRFK +NDT GHQAG+ Sbjct: 505 LEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVNDTLGHQAGD 564 Query: 680 AVLQEIAQRFRHSLRELDILARVGGDEFIVLVDDFDDPLQLGEIAQKLLTEARKPFIIDG 739 +L+ ++ R + ++R+ D +AR+GGDEF++++ + D I Q+++ +P I+G Sbjct: 565 ILLKAVSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTGIMQRIMESIAQPLTIEG 624 Query: 740 QEATLSASIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEVNTNTVERIAL 799 E +S SIG+A YP DG+ + LIK+ADIAMYRAK G+++++F++ +N +ER+ + Sbjct: 625 HEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHI 684 Query: 800 EAELRRAIERAEFVVHYQPKVDLASGAIVGAEALVRWQHPVRGLVGPNEFIPMAEESRLI 859 E +LR A+ER EF +HYQP+VDL SG IVG EAL+RWQHP G+V P FI +AEE+ LI Sbjct: 685 EGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLI 744 Query: 860 DQIGLVVLDIACRDIGLLLEHQLECGRISINLTGSQFGDAHLLQDIKGVVQRHGTPPACL 919 IG V+ AC + E R+S+NL+ QF L+ I ++ P L Sbjct: 745 VPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYL 804 Query: 920 EFEITESMVMRNRDRAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLKIDKSFI 979 E E+TES+VM + DRAI I+ ++A G +SIDDFGTGYSSL+YLKRFP++ LKID+SF+ Sbjct: 805 EIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFV 864 Query: 980 NDIPDDANSSAIVQAIIAMSHALNLKVVTEGVETERQWQALREFGSDEYQGYYFSKPVPY 1039 NDI D + +AIV ++I+++H+L L V+ EGVETE Q LRE D+ QGY+FS+PV Sbjct: 865 NDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVTA 924 Query: 1040 AQFLQML 1046 F ML Sbjct: 925 EAFSVML 931 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/438 (45%), Positives = 271/438 (61%), Gaps = 1/438 (0%) Query: 614 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGLVAVLLMDLDRFKNINDTF 673 + A RI LAH+D LTGLPNR L + A+ AE +AV+ +DLD FKNINDT Sbjct: 422 KNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTL 481 Query: 674 GHQAGEAVLQEIAQRFRHSLRELDILARVGGDEFIVLVDDFDDPLQLGEIAQKLLTEARK 733 GH G+ +L E+AQR R LR D L+R+GGDEF++L+ + +IAQ+L+ + Sbjct: 482 GHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRE-SAKKIAQELMRAINE 540 Query: 734 PFIIDGQEATLSASIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEVNTNT 793 P+ I E + ASIGIA YP DG + +TL KNAD+AMYRAK G++ YR F+ E+ + Sbjct: 541 PYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQAYS 600 Query: 794 VERIALEAELRRAIERAEFVVHYQPKVDLASGAIVGAEALVRWQHPVRGLVGPNEFIPMA 853 + + LR+AI + + VHYQP++ L SG ++GAEAL+RW HP G + P EFIP+A Sbjct: 601 TRYLQVLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIA 660 Query: 854 EESRLIDQIGLVVLDIACRDIGLLLEHQLECGRISINLTGSQFGDAHLLQDIKGVVQRHG 913 EES LI QIG VL +A + L+ I++NL+ QF A L + +++ Sbjct: 661 EESGLILQIGEWVLRVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLVMQILKEED 720 Query: 914 TPPACLEFEITESMVMRNRDRAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLK 973 PP LE E+TE + M + AIA+M+ + G +SIDDFGTGYSSL+YLK+F LK Sbjct: 721 FPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLK 780 Query: 974 IDKSFINDIPDDANSSAIVQAIIAMSHALNLKVVTEGVETERQWQALREFGSDEYQGYYF 1033 ID+SF+ DI DA AIV AII M+ L L+ + EGVET Q LRE G E QGY++ Sbjct: 781 IDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHY 840 Query: 1034 SKPVPYAQFLQMLLQQQA 1051 SKP+P A F +L A Sbjct: 841 SKPLPAADFETFILGASA 858 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/441 (43%), Positives = 286/441 (64%), Gaps = 3/441 (0%) Query: 610 AIESRRADE-RIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGLVAVLLMDLDRFKN 668 AI R+ E I+ A +D LTGLPNR L + A+ H+ L A+ +DLD+FK Sbjct: 272 AITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKF 331 Query: 669 INDTFGHQAGEAVLQEIAQRFRHSLRELDILARVGGDEFIVLVDDFDDPLQLGEIAQKLL 728 IND+ GHQ G+ +L+ AQR LRE D +AR GGDEF++L+ + Q++L Sbjct: 332 INDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVL 391 Query: 729 TEARKPFIIDGQEATLSASIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDE 788 E +P++ +G E ++ S+G+ P DG +A+TL+KNAD AMY+AK G++++++F+ E Sbjct: 392 HEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATE 451 Query: 789 VNTNTVERIALEAELRRAIERAEFVVHYQPKVDLASGAIVGAEALVRWQHPVRGLVGPNE 848 +N +R+AL LR+AI EFV+HYQPK++LA+G I+GAEAL+RW + G+V P Sbjct: 452 MNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRW-NSAEGMVSPGS 510 Query: 849 FIPMAEESRLIDQIGLVVLDIACRDIGLLLEHQLECGRISINLTGSQFGDAHLLQDIKGV 908 FIP+AEE+ LI IG+ VL+ ACR IS+NL+ Q +++ ++ V Sbjct: 511 FIPLAEETGLIIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQV 570 Query: 909 VQRHGTPPACLEFEITESMVMRNRDRAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFP 968 + G LE EITES++ + +++ A++ +R G IS+DDFGTGYSSL+YLKRFP Sbjct: 571 LAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFP 630 Query: 969 VNTLKIDKSFINDIPDDANSSAIVQAIIAMSHALNLKVVTEGVETERQWQALREFGSDEY 1028 V+TLKID+SF+ D+ +S+AIV+AII++ H LNL V+ EG+ETE Q+Q L + +E Sbjct: 631 VDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEG 690 Query: 1029 QGYYFSKPVPYAQFLQMLLQQ 1049 QGY S+PV + F ++LLQ+ Sbjct: 691 QGYLMSRPVSHQHF-ELLLQR 710 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/434 (40%), Positives = 278/434 (64%) Query: 614 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGLVAVLLMDLDRFKNINDTF 673 +R E + H A+YD LTGL NR L + A+ A + ++++ +DLD FK +ND+ Sbjct: 379 KRYQEDLEHQANYDTLTGLANRNLLNERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSM 438 Query: 674 GHQAGEAVLQEIAQRFRHSLRELDILARVGGDEFIVLVDDFDDPLQLGEIAQKLLTEARK 733 GH AG+ ++ + R + +R+ D +AR+GGDEF++L+ + + Q++ E K Sbjct: 439 GHGAGDELIANVGSRLQTCVRDGDTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQAELIK 498 Query: 734 PFIIDGQEATLSASIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEVNTNT 793 P I GQE ++ S+G+A +P DG+++++L+ NAD AMYRAK G+++++F++ E+N + Sbjct: 499 PMWIRGQEIVVTCSMGVARFPEDGEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNATS 558 Query: 794 VERIALEAELRRAIERAEFVVHYQPKVDLASGAIVGAEALVRWQHPVRGLVGPNEFIPMA 853 ER++LE++L A++ E + YQP++DL G ++G EAL+RWQHP RGL+ P +FIPMA Sbjct: 559 GERLSLESDLWHALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMA 618 Query: 854 EESRLIDQIGLVVLDIACRDIGLLLEHQLECGRISINLTGSQFGDAHLLQDIKGVVQRHG 913 E + LI IG+ VL+ ACR L + L R++INL+ Q D + ++ ++ V++ G Sbjct: 619 ECNGLIIPIGIWVLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSVIEAIG 678 Query: 914 TPPACLEFEITESMVMRNRDRAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLK 973 P LE E+TESMVM N + + ++ + G +S+DDFGTG+SSLAYLKRFP++ LK Sbjct: 679 LDPHYLELEVTESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLK 738 Query: 974 IDKSFINDIPDDANSSAIVQAIIAMSHALNLKVVTEGVETERQWQALREFGSDEYQGYYF 1033 ID+SFI + D + I Q IIA++H L +KV+ EGVE L++ G DE QGY+ Sbjct: 739 IDQSFIFNCDSDPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFI 798 Query: 1034 SKPVPYAQFLQMLL 1047 S+P+ + LL Sbjct: 799 SRPLTFDDLRMFLL 812 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/428 (42%), Positives = 264/428 (61%), Gaps = 1/428 (0%) Query: 616 ADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGLVAVLLMDLDRFKNINDTFGH 675 A++ + A D LT LPNR L ++ + AE + A++ +DLD FK IND+ GH Sbjct: 259 ANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKAINDSLGH 318 Query: 676 QAGEAVLQEIAQRFRHSLRELDILARVGGDEFIVLVDDFDDPLQLGEIAQKLLTEARKPF 735 G+ +L E+AQR R S+R D AR+GGDEF++L++ +P +A KL +PF Sbjct: 319 HIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIE-VTEPEDAASVADKLCNIINQPF 377 Query: 736 IIDGQEATLSASIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEVNTNTVE 795 ID +SAS+GI YP DG L+ NAD AMY K G++ Y FF +N N Sbjct: 378 EIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANAHN 437 Query: 796 RIALEAELRRAIERAEFVVHYQPKVDLASGAIVGAEALVRWQHPVRGLVGPNEFIPMAEE 855 ++ + +LR A+ER EF +HYQPK + +G +VGAEAL+RWQHP RG++ P++FI +AE+ Sbjct: 438 QLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEK 497 Query: 856 SRLIDQIGLVVLDIACRDIGLLLEHQLECGRISINLTGSQFGDAHLLQDIKGVVQRHGTP 915 + LI IG VLD ACR + + + + ++++NL+ QF + HL++ ++ + R+ P Sbjct: 498 TGLIVPIGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFP 557 Query: 916 PACLEFEITESMVMRNRDRAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLKID 975 + L E+TES M + + ++ I+D + G ISIDDFGTGYSSL YLKR P LKID Sbjct: 558 ASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKID 617 Query: 976 KSFINDIPDDANSSAIVQAIIAMSHALNLKVVTEGVETERQWQALREFGSDEYQGYYFSK 1035 + FI D+ +N S+IV AIIA+ +LNL +V EGVETE Q LR G D QGY + Sbjct: 618 RGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGR 677 Query: 1036 PVPYAQFL 1043 P+ QF+ Sbjct: 678 PMAPDQFM 685 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,835,285 Number of extensions: 72613 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 35 Length of query: 1066 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 975 Effective length of database: 700,502 Effective search space: 682989450 Effective search space used: 682989450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)