BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2760.p (368 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094301|ref|YP_001099376.1| putative glutathione-dependent ... 676 0.0 gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldeh... 467 e-133 gi|134095544|ref|YP_001100619.1| zinc-binding alcohol dehydrogen... 67 1e-12 >gi|134094301|ref|YP_001099376.1| putative glutathione-dependent formaldehyde dehydrogenase [Herminiimonas arsenicoxydans] Length = 368 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/368 (91%), Positives = 352/368 (95%) Query: 1 MKTRAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL 60 MKT+AAVAW+AG+PLTIEEVELGGP+ GEVLVEIKATGICHTDYYTLSGADPEGIFPAIL Sbjct: 1 MKTKAAVAWKAGQPLTIEEVELGGPREGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL 60 Query: 61 GHEGAGVVVDVGPGVKSLKKDDHVIPLYTPECRECKFCLSQKTNLCQAIRATQGRGLMPD 120 GHEGAGVVV+VG GVKSLKKDDHVIPLYTPECRECKFCLS+KTNLCQ IR+TQGRGLMPD Sbjct: 61 GHEGAGVVVEVGAGVKSLKKDDHVIPLYTPECRECKFCLSRKTNLCQKIRSTQGRGLMPD 120 Query: 121 ATSRFSLDGKPLFHYMGTSTFSNYIVVPEIALAKIRSDAPFDKVCYIGCGVTTGVGAVLF 180 ATSRFS+DGKPLFHYMGTSTFSNYIVVPEIALAKIR DAPFDKVCYIGCGVTTGVGAVLF Sbjct: 121 ATSRFSIDGKPLFHYMGTSTFSNYIVVPEIALAKIREDAPFDKVCYIGCGVTTGVGAVLF 180 Query: 181 TAKVEAGANVVVFGLGGIGLNVIQAAKMVGANKIIGVDLNPARESMARKFGMTDFINPKD 240 TAKVEAGANVVVFGLGGIGLNVIQAAKMVGA+KIIGVDLNPARE+MARKFGMT FINP Sbjct: 181 TAKVEAGANVVVFGLGGIGLNVIQAAKMVGADKIIGVDLNPAREAMARKFGMTHFINPSK 240 Query: 241 VPNVVDAIIGMTDGGADYSFECIGNTTTMRQALECCHKGWGQSIIIGVAAAGQEISTRPF 300 V NVVDAI+ +TDGGADYSFECIGN TMRQALECCHKGWGQSI+IGVA AG EISTRPF Sbjct: 241 VENVVDAIVQLTDGGADYSFECIGNVHTMRQALECCHKGWGQSIVIGVAEAGAEISTRPF 300 Query: 301 QLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHKLPLERINEGFDLMKSGE 360 QLVTGR WKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITH LPLERINEGFDLMKSGE Sbjct: 301 QLVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDLMKSGE 360 Query: 361 SIRSVVEF 368 SIRSVV + Sbjct: 361 SIRSVVIY 368 >gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldehyde dehydrogenase [Herminiimonas arsenicoxydans] Length = 369 Score = 467 bits (1201), Expect = e-133, Method: Compositional matrix adjust. Identities = 222/369 (60%), Positives = 282/369 (76%), Gaps = 1/369 (0%) Query: 1 MKTRAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL 60 MK+RAAVA+ GKPL I E+++ P+ GEVL++I TG+CHTD +TLSG DPEG+FP +L Sbjct: 1 MKSRAAVAFGPGKPLEIVEIDVEPPRKGEVLIKITNTGVCHTDAFTLSGDDPEGLFPVVL 60 Query: 61 GHEGAGVVVDVGPGVKSLKKDDHVIPLYTPECRECKFCLSQKTNLCQAIRATQGRGLMPD 120 GHEGAG+VV+VG GV S+K DHVIPLYT EC EC FC S KTNLC A+RATQG+GLMPD Sbjct: 61 GHEGAGIVVEVGEGVTSVKPGDHVIPLYTAECGECLFCKSGKTNLCVAVRATQGKGLMPD 120 Query: 121 ATSRFSLDGKPLFHYMGTSTFSNYIVVPEIALAKIRSDAPFDKVCYIGCGVTTGVGAVLF 180 T+RFS +G+PL+HYMG STFS Y VV E++LAKI DA + VC +GCGVTTG+GAV Sbjct: 121 GTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPDANPEHVCLLGCGVTTGIGAVHN 180 Query: 181 TAKVEAGANVVVFGLGGIGLNVIQAAKMVGANKIIGVDLNPARESMARKFGMTDFINPKD 240 TAKV+ G +V +FGLGGIGL IQ A+ A +II +D NPA+ +AR FG T+ +NPKD Sbjct: 181 TAKVQPGDSVAIFGLGGIGLAAIQGARQAKAGRIIAIDTNPAKFELARTFGATECLNPKD 240 Query: 241 VPNVV-DAIIGMTDGGADYSFECIGNTTTMRQALECCHKGWGQSIIIGVAAAGQEISTRP 299 + + +I MT G D++FECIGN MR ALE H+GWGQSI+IGVA AG+EISTRP Sbjct: 241 FDKPIHEVLIEMTGWGVDHTFECIGNVNVMRSALEAAHRGWGQSIVIGVAGAGKEISTRP 300 Query: 300 FQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHKLPLERINEGFDLMKSG 359 FQLVTGR WKGSAFGG +GRT +P +V+ M+G++++ +TH + L+ IN FDLM G Sbjct: 301 FQLVTGRTWKGSAFGGVKGRTQLPGMVEDAMKGEIDLAPFVTHTMGLDEINHAFDLMHEG 360 Query: 360 ESIRSVVEF 368 +SIR+V+ + Sbjct: 361 KSIRTVIHY 369 >gi|134095544|ref|YP_001100619.1| zinc-binding alcohol dehydrogenase [Herminiimonas arsenicoxydans] Length = 277 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Query: 4 RAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAILGHE 63 +A V AG+ L + VE A ++L+ + G+C TD + L P +FP I GHE Sbjct: 2 KAMVLSAAGEALQLRSVEKPVAGANDLLIRVHTCGVCRTDLHLLDAELPNAVFPIIPGHE 61 Query: 64 GAGVVVDVGPGVKSLKKDDHV-IPLYTPECRECKFCLSQKTNLC 106 G +V G V+S + D +P C +C +C++ + NLC Sbjct: 62 IVGTIVATGSAVQSFRIGDRAGVPWLGHTCGQCSYCVAGQENLC 105 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 715,268 Number of extensions: 30156 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 4 Length of query: 368 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 285 Effective length of database: 726,862 Effective search space: 207155670 Effective search space used: 207155670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)