BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2748.p
         (328 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...    96   3e-21

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score = 95.5 bits (236), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 135/312 (43%), Gaps = 69/312 (22%)

Query: 9   TGAEVSEIGFGAWAIGGSWGDVSAQDAK--AALHAALDAGVSFIDTADVYGDGRSEQLIA 66
           +G  V  +G G W +G    D +++ A+  A L   LD G++ IDTA++YGDG SE+L+ 
Sbjct: 8   SGEAVPVLGQGTWYMG----DHASRRAEEIATLRLGLDFGMTLIDTAEMYGDGASEKLVG 63

Query: 67  QVLKERGGPRPFVATKAGRR-----LSPHVASGYQRDNLTAFVERSLQNLEVDCLDLVQL 121
           + +             AGRR     +S  + S   R    A  ERSL+ L  D +DL  L
Sbjct: 64  EAI-------------AGRRDEVFLVSKVLPSNATRHGTIAACERSLKRLGTDRIDLYLL 110

Query: 122 HCPPTEVYYQQEVFGYMDELVAAGKIRHYGVS---VEKVEEALKAIEYPNVKSVQIIFNI 178
           H      +   E     + L  AGKIRH+GVS   V+ + E  +A     V   Q+++N+
Sbjct: 111 HWRGRTPF--AETIAAFEALQDAGKIRHWGVSNMDVDDMREIARASGGEAVAVNQVLYNL 168

Query: 179 FRQRPISLFLHEAQRRDIAVIARVPLASGLLTGKMSAQTTFAADDHRQFNRHGEAFDVGE 238
            R+      L +AQ+R + ++A  P+  G LT     Q    AD H              
Sbjct: 169 TRRGIEYDLLPQAQQRGLPIMAYSPIEQGRLTESPEVQDI--ADRH-------------- 212

Query: 239 TFSGVPYEVALAAVEKIRTLVPPGVSMAQFALRWILMESGVSTVIPGARNVQQAQSNSAA 298
                                  G S AQ AL W+L + GV   IP A      Q N AA
Sbjct: 213 -----------------------GASPAQIALAWVLRQPGV-IAIPKASTPAHVQQNRAA 248

Query: 299 SDLPPLAQEVMQ 310
            D+   AQ++ +
Sbjct: 249 LDIKLTAQDLAE 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 580,530
Number of extensions: 21551
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 246
Effective length of database: 730,157
Effective search space: 179618622
Effective search space used: 179618622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)