BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2745.p
         (408 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094219|ref|YP_001099294.1| multidrug resistance secretion ...   385   e-108

>gi|134094219|ref|YP_001099294.1| multidrug resistance secretion
           protein; putative periplasmic linker protein
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/385 (56%), Positives = 286/385 (74%), Gaps = 7/385 (1%)

Query: 14  ANGNGNGKRTRQLILLTVVLVIVAAACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGT 73
           +N N NGKR R LI+++++LV++  A  L+W ++AR FE TDDAYV GNVVQ++ QVGGT
Sbjct: 11  SNSNNNGKRRRHLIIVSILLVLLLIAYGLWWAIYARHFEGTDDAYVAGNVVQVTPQVGGT 70

Query: 74  VVAVKADDTQLVKLGQPLVALDAADTKLALDQAQAALAQAVRQTRQLFLNNDTLAANVAA 133
           VVA+ ADDT+LV  G PLV LD +D K+AL+QA+A LAQ VR+ R LF+NN TL ANVA 
Sbjct: 71  VVAIHADDTELVHAGMPLVELDHSDAKVALNQAEAQLAQTVREVRTLFVNNGTLNANVAL 130

Query: 134 ADANLARAREDLQRRQAGLSSGAVSQEDVSHARDALKSATAALDQARAAAAANRALTDHT 193
             A++ARAR DL RRQ    +GAVS+ED+ HAR AL++A +AL   R   A+N+ LTD T
Sbjct: 131 RVADVARARADLARRQELSGTGAVSKEDLEHARSALQTAESALQATREQLASNQVLTDRT 190

Query: 194 SVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQ 253
           SV  HPNV +AA  V+ AYL  AR  + AP++G+V+KRSVQVGQR+A G PL++IVPL  
Sbjct: 191 SVASHPNVQRAAAQVQAAYLALARNTLPAPITGYVAKRSVQVGQRVAPGTPLLSIVPLTT 250

Query: 254 IWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGN 313
           +W+DANFKE Q+  +RIGQPV + +D+YGSSV+Y G V G SAGTG AF+LLP QNA+GN
Sbjct: 251 LWVDANFKEVQVARMRIGQPVTLHSDLYGSSVEYHGKVAGLSAGTGAAFALLPTQNASGN 310

Query: 314 WIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDI-HGDGRTLEAVPTN-----YQTNV 367
           WIKVVQR+PVRIALDP+++   PLR+GLS    VDI H +G +L AV        YQT V
Sbjct: 311 WIKVVQRIPVRIALDPKELTERPLRVGLSMQVEVDIAHAEGTSLTAVTAARTEPVYQTAV 370

Query: 368 YNDLDKQADAIVERIISDNA-SGLP 391
           +++  ++A+A V +II+ N+ + LP
Sbjct: 371 FDNAGQEAEARVAQIIAANSNAALP 395


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 573,371
Number of extensions: 20932
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 324
Effective length of database: 723,567
Effective search space: 234435708
Effective search space used: 234435708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)