BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2744.p (500 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094218|ref|YP_001099293.1| hypothetical protein HEAR0984 [... 323 1e-89 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 177 1e-45 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 141 6e-35 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 137 1e-33 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 125 4e-30 >gi|134094218|ref|YP_001099293.1| hypothetical protein HEAR0984 [Herminiimonas arsenicoxydans] Length = 501 Score = 323 bits (828), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 284/482 (58%), Gaps = 5/482 (1%) Query: 18 AVLAALIGALALSGCASFDGIGSDKQLAQARDFNTQRSLSDPNPGAPDGQWPGSDWVQQF 77 ++LAA + LS CASF GI S +L Q D+ T SL D + GQWP + W Sbjct: 14 SLLAASCAVVLLSACASFKGIDSSARLQQPGDYATAASLPDQH-----GQWPDASWAHTI 68 Query: 78 GDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEFSSTSI 137 G A L ALI EA+A +PNLQ A AR+ AA A+ EA GA P+ A FS I Sbjct: 69 GGASLQALIDEAIAGNPNLQIAAARVAAARAVAEAAGAASSPAWSANFKSTYQRFSENYI 128 Query: 138 YPPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVS 197 PPPY G++ ++ LN Y+ D W ++ A L A+S +KAAQA + ARL + S+ Sbjct: 129 IPPPYAGSYQSDNSLTLNFSYDFDFWGRHAAELRSALSQDKAAQAEQYNARLVIATSVAH 188 Query: 198 VYSQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSRTSSADARAQLEQS 257 + QLA YA D+ Q+ ++ S + +T R K GLD++ E Q+R A A+ EQ Sbjct: 189 AWIQLARLYAQLDLNQQQLEVSSKMAHLTQLRFKAGLDAKSENQQTRQQVASLGAEREQL 248 Query: 258 AGQIVLLRQQLGALTGRGPDRGLQLAPPTLQNLATPALPAKLPLNLLGRRPDIVAARWQV 317 QI L R QL AL G+GPDRG Q+ PTL ALP LPL LLGRRPDIVAARWQV Sbjct: 249 QEQIALTRNQLAALLGQGPDRGRQIERPTLPADVATALPDALPLALLGRRPDIVAARWQV 308 Query: 318 EAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAITLPIFEGGALRA 377 EAA G+ A+ FYP++NL A GF S+ SN + S+ + GPA+++PI EG LRA Sbjct: 309 EAADGGIAAARTAFYPNVNLMAFAGFSSIGLSNLLQSGSRVVGIGPAVSVPILEGRTLRA 368 Query: 378 GLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREALQAAERAHDLARE 437 LKG A Y+ VATYN+ L DA DVA Q+A++ + Q ++ A QAA DLA++ Sbjct: 369 NLKGRVAEYDGMVATYNRALTDALHDVADQVASMRAVALQSEQQQRATQAAAGNLDLAQQ 428 Query: 438 RYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGFDAQQAGLAYSAA 497 R R+G + L LSA +LAQR+ + LQA+R + +V L KALGGGFDAQ LA Sbjct: 429 RERVGTTNMLPALSAHMTLLAQRRMDLDLQARRSDLRVGLIKALGGGFDAQSQDLAKENP 488 Query: 498 PP 499 P Sbjct: 489 TP 490 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 136/418 (32%), Positives = 214/418 (51%), Gaps = 17/418 (4%) Query: 73 WVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEF 132 W F D +L LI AL ++ +L+ A + A A + + A P++D SV RN Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDG--SVARNRS 125 Query: 133 SSTSIYPPPYGGNWYNEKKAGLNVGYELDLW----NKNQAALAQAISSEKAAQASEQEAR 188 + P G++Y+ A L+ +ELDL+ N +QAAL Q + E+ ++ A+ Sbjct: 126 GGNVVNP----GDYYS---AALSASFELDLFGRIHNLSQAALEQYFAQEEG----QRSAQ 174 Query: 189 LALTASIVSVYSQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSRTSSA 248 L+L A I + Y AA Q I Q T + + +R + G S ++ +Q++T+ Sbjct: 175 LSLIAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIE 234 Query: 249 DARAQLEQSAGQIVLLRQQLGALTGRGPDRGLQLAPPTLQNLATPALPAKLPLNLLGRRP 308 ARA + + AG + R L L G + L L+ LPA+LP +L RRP Sbjct: 235 TARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPLPAQLPSQVLLRRP 294 Query: 309 DIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAITLP 368 D+ + A+ + A+A F+P I+L+ +G S S F + +K +F P I+LP Sbjct: 295 DVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQISLP 354 Query: 369 IFEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREALQAA 428 IF GGALRA L A+ ++A+A Y K + + +VA +A + ++ ++ L AA Sbjct: 355 IFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQALLDAA 414 Query: 429 ERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGFD 486 RA+DL++ RY+ G S L LL A+ +QSLVA Q + +V LYK LGGG++ Sbjct: 415 SRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGGWE 472 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 141 bits (356), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 133/429 (31%), Positives = 214/429 (49%), Gaps = 34/429 (7%) Query: 73 WVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEF 132 W F D +L ALI ALA++ +L+ A RI A A + A LLP+++ + R Sbjct: 53 WRNFFPDQRLQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSR--- 109 Query: 133 SSTSIYPPPYGGNWYNEK-KAGLNVG-YELDLWNK----NQAALAQAISSEKAAQASEQE 186 + T P G + + + GL++ +ELD + + N AALA +++E+A +A Sbjct: 110 ARTPASISPTGIDSVSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRA---- 165 Query: 187 ARLALTASIVSVY---SQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQS 243 A ++L A + Y A Q A + Q T++ R + +R + G S ++ Q+ Sbjct: 166 AHISLVAEVAKAYLAERAFAEQLA---LAQSTLKSRGTAYDLAKQRFEVGASSALDLRQN 222 Query: 244 RTSSADARAQLEQSAGQIVLLRQQ---LGALT---GRGPDRGLQLAPP-TLQNLATPALP 296 AR Q+ L RQ+ L ALT G+ P G A P + QN+ T +P Sbjct: 223 EALLQSARV------AQVTLARQRAQALNALTLLVGQ-PLTGFPEAQPLSAQNIVTD-IP 274 Query: 297 AKLPLNLLGRRPDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAAS 356 A LP +LL +RPDI +A + AA+ + A+A F+P I+L+A IG S SN F + + Sbjct: 275 AGLPSDLLTQRPDIRSAEQSLLAANANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGT 334 Query: 357 KSIAFGPAITLPIFEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTER 416 ++ F P + LPIF+ G A L +A+A Y K++ A+ +V+ + A E Sbjct: 335 RAWTFAPQLVLPIFDAGRNSANLTLSEVRKNIAIANYEKSIQSAFREVSDALVARDLLEE 394 Query: 417 QLPIRREALQAAERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVA 476 Q+ +R +A LA +R++ G+ S L +L A+ + + Q LV + R + Sbjct: 395 QIDAQRRVQEAQAERLKLADQRFQNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAID 454 Query: 477 LYKALGGGF 485 LY++LGGG Sbjct: 455 LYRSLGGGL 463 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 141/434 (32%), Positives = 213/434 (49%), Gaps = 46/434 (10%) Query: 73 WVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEF 132 W F DA+L LI +AL ++ +L+ A R+ A A + A P++ AQA R Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHV 125 Query: 133 -SSTSIYPPPYGGNWYNEKKAGLNVGYELDLWNK----NQAALAQAISSEKAAQASEQEA 187 + S+ P + Y+ GL +E+D W + AAL ++S+ EA Sbjct: 126 PADLSLTGKPAMSSQYH-VSLGL-ASWEIDFWGRVRSLRDAALENYLASD--------EA 175 Query: 188 RLALTASIVSVYSQLAAQY-AVQDILQR------TVQQRSALESITAERLKTGLDSQIER 240 R A+T S+V+ Q+A Y A+ ++ +R T+ R I R++ G S++ Sbjct: 176 RRAVTISLVA---QVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNL 232 Query: 241 NQSRTSSADARA---QLEQS----AGQIVLL---RQQLGALTGRGPDRGLQLAPPTLQNL 290 Q +T + A+A QLEQ+ A ++LL +L A + R +R + L Sbjct: 233 TQVQTLLSQAQALGAQLEQARALQANALILLVGVTLELPATSSRLDERQMLL-------- 284 Query: 291 ATPALPAKLPLNLLGRRPDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSN 350 P P LP +LL RRPDIVAA Q++AA + A+A F+P I L+ G S Sbjct: 285 --PLQPG-LPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDG 341 Query: 351 PFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAA 410 F A S++ F P+I+LP+F+ G L A +LAVA Y KT+ A+ DVA +AA Sbjct: 342 LFAAGSRAWTFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAA 401 Query: 411 IHSTERQLPIRREALQAAERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQR 470 +QL I + AL L++ RY G ++L +L A+ +L Q LV ++ Sbjct: 402 RQWLAQQLLIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRAL 461 Query: 471 REQQVALYKALGGG 484 QV+LY ALGGG Sbjct: 462 LSSQVSLYAALGGG 475 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 130/439 (29%), Positives = 197/439 (44%), Gaps = 29/439 (6%) Query: 63 APDGQWPGSDWVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVD 122 AP G DW + FG +L+ALI ++LA SP+L A R+ A + GA L P + Sbjct: 46 APAGIELQRDWWRGFGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLT 105 Query: 123 AQASVIRNEFSSTSIYPPPYGGNWYNEKKAG--LNVGYELDLWNKNQAALAQAISSEKAA 180 A + + P P G W + G L+V YE+D+W + A A +S A+ Sbjct: 106 VSAGT-----DTGQVKPGPTGSGWARSESTGVALSVNYEVDVWGRVAATTRSANASLNAS 160 Query: 181 QASEQEARLALTASIVSVYSQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIER 240 + + RL LT + + Y Q A + Q + L SI R + G S ++ Sbjct: 161 RYDLETVRLTLTTGVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDV 220 Query: 241 NQSRTSSADARAQLEQSAGQIVLLRQQLGALTGRGPDRGLQLAPPTLQNLATPALPAKLP 300 ++ R++ RA + Q L L GR P + LQ+A +L LA P + LP Sbjct: 221 SRQRSTVLAQRATILPLQVQERQTVSALAILLGRQP-QALQVAALSLDTLAIPEVSPGLP 279 Query: 301 LNLLGRRPDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDS---LMDSNPFTAASK 357 L+ RRPD+ + Q+ A S V A+A P I+L+ G S L NP + Sbjct: 280 STLITRRPDVASVEAQLLAGSANVAAARAALLPTISLTGSAGNASAALLTLGNP----AY 335 Query: 358 SIAFGPAITLPIFEGGALRAGLKGEYA-------NYELAVATYNKTLNDAYADVARQIAA 410 SI +I +F+G +LR ++ + +Y V T K ++DA + R Sbjct: 336 SIGIAASIVQTLFDGNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNR-- 393 Query: 411 IHSTERQLPIRREALQAAERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQR 470 + Q+ I++EA ERA L+ RYR G +LL A+ + A L L+ R Sbjct: 394 -EQEQAQIAIKKEA----ERALALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLR 448 Query: 471 REQQVALYKALGGGFDAQQ 489 ++KALGGG+ Q Sbjct: 449 LTGTTDVFKALGGGWSKPQ 467 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 797,156 Number of extensions: 28113 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 9 Length of query: 500 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 414 Effective length of database: 716,977 Effective search space: 296828478 Effective search space used: 296828478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)