BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2741.p (809 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 335 7e-93 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 319 3e-88 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 302 4e-83 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 301 6e-83 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 296 4e-81 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 335 bits (858), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 194/453 (42%), Positives = 266/453 (58%), Gaps = 11/453 (2%) Query: 332 QDEIGRLGAAFETMRSEIANRELKISRLAYQ---DHLTGLPNRVQFADLLKEAIAQVQRS 388 +D+ G + + F ++ +I + S L +Q D LTGL NR D L +A++ R Sbjct: 479 KDDTGTV-SHFIVVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRLGQAVSYAHRY 537 Query: 389 GGGSCYILMMDLDRFQQVNDVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAIL 448 G +IL +DLDRF+ VND LGH GD LL+ V+ RL + +AR+GGDEF ++ Sbjct: 538 GH-PIWILFVDLDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDT-VARMGGDEFVLI 595 Query: 449 LPEVDLDGALAQAT--HILRVLEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEV 506 LPE D L+ I+ + QPL+++ + IGVA YPA G+T EL+ A++ Sbjct: 596 LPE-RTDAGLSTGIMQRIMESIAQPLTIEGHEFFISGSIGVAVYPADGETPEELIKHADI 654 Query: 507 AMYTAKRKG-SGVVIYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIG 565 AMY AK G + Y PA+++ + E L + +LR ALER+EF L+ QP+++L +G ++G Sbjct: 655 AMYRAKETGRNNFQFYTPAMNERALERLHIEGDLRNALEREEFTLHYQPQVDLRSGQIVG 714 Query: 566 AEALVRWVHPEKGFVGPDNFIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGL-SLKFSV 624 EAL+RW HPE G V P FI AE G I + W++ + Q G L+ SV Sbjct: 715 VEALIRWQHPELGMVPPVRFIGLAEENGLIVPIGAWVIRTACLQNKVWQESGFGHLRMSV 774 Query: 625 NLSTRDLLDQELPVAFAAILERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFAL 684 NLS R ++L + A L L P+ L +E+TES +M D RA L L A+G L Sbjct: 775 NLSARQFAQEDLVDSIAVSLREANLAPEYLEIELTESLVMADVDRAIGILRELKALGVQL 834 Query: 685 SIDDFGTGYSSLAYLKSLPVDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAE 744 SIDDFGTGYSSL+YLK P+D LKID+SFV + D DDA IV S I L H+L L V+AE Sbjct: 835 SIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITIDPDDAAIVASVISLAHSLRLDVIAE 894 Query: 745 GVESEEVWFLLRQMGCDQGQGYFMGKPMPVEHF 777 GVE+EE LR+ CDQ QGYF +P+ E F Sbjct: 895 GVETEEQLTYLREHNCDQIQGYFFSRPVTAEAF 927 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 319 bits (817), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 179/462 (38%), Positives = 261/462 (56%), Gaps = 12/462 (2%) Query: 349 IANRELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVND 408 +AN+EL +R A QD+LT LPNR D L + + + +R+ ++ +DLD F+ +ND Sbjct: 258 VANQEL--TRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFA-LMFIDLDGFKAIND 314 Query: 409 VLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQATHILRVL 468 LGH GD LL +VA R+ G + A ARLGGDEF +L+ + + A + A + ++ Sbjct: 315 SLGHHIGDMLLIEVAQRIRGSI-RAQDTAARLGGDEFVLLIEVTEPEDAASVADKLCNII 373 Query: 469 EQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-SGVVIYDPAIDQ 527 QP + T+ + A +G+ YP G T +LL A+ AMY K G +G ++ +++ Sbjct: 374 NQPFEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNA 433 Query: 528 SSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIP 587 ++ L ++ +LR ALER EF L+ QPK G V+GAEAL+RW HP +G + PD+FI Sbjct: 434 NAHNQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIA 493 Query: 588 FAETTGFIRMLTLWMMEKVAGLSAQLQAQG-LSLKFSVNLSTRDLLDQELPVAFAAILER 646 AE TG I + W++++ +G K +VNLS + L L R Sbjct: 494 LAEKTGLIVPIGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLAR 553 Query: 647 HRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDE 706 + L LE+TES M D + L++L+ +G +SIDDFGTGYSSL YLK LP E Sbjct: 554 NNFPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATE 613 Query: 707 LKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGY 766 LKID+ F+ +AQ +D+ IV + I LG +L L +VAEGVE+EE LR +GCD QGY Sbjct: 614 LKIDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGY 673 Query: 767 FMGKPMPVEHFLEWRQQWRVPHRSALSGNLVGSTQRPGIAGT 808 MG+PM + F++ H +AL+ S P +G Sbjct: 674 LMGRPMAPDQFMD------AIHTAALASEQAASLVPPNTSGN 709 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 302 bits (773), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 169/417 (40%), Positives = 251/417 (60%), Gaps = 6/417 (1%) Query: 360 AYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGHSFGDDLL 419 A D+LTG+PNR F ++ +A+ +RS + +DLD+F+ +ND LGH+ GD LL Sbjct: 168 ASHDYLTGVPNRRLFYEMAATELARAKRSRKLYA-LFFLDLDKFKLINDTLGHAVGDLLL 226 Query: 420 RQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQ-ATHILRVLEQP-LSLQEQ 477 + VA RL L +ARLGGDEF IL+ E+ + +A+ A ++ V+ P L L Sbjct: 227 QGVARRLRESLREYDL-LARLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGN 285 Query: 478 TMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGSGVV-IYDPAIDQSSQESLSLL 536 +D+ IG+A YP GQ LL A++AMY+AK G+ +D +++ SS LL Sbjct: 286 DIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFDTSLNASSARETELL 345 Query: 537 SELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIPFAETTGFIR 596 S +RA++ DEF L+ QP++EL +V+G EAL+RW HPE G + P++FI AE I Sbjct: 346 SRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIV 405 Query: 597 MLTLWMMEKVAGLSAQLQAQGLSL-KFSVNLSTRDLLDQELPVAFAAILERHRLTPDALC 655 L W+++ A + QGL + ++N+S+R L D L L ++++ P+ L Sbjct: 406 PLGNWVVDAACRQLAVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLE 465 Query: 656 LEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDELKIDKSFVM 715 +E+TES ++D A LE+L G +++DD+GTG+S L LK LP+ +KID+SF+ Sbjct: 466 IEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIR 525 Query: 716 KMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPM 772 + D DA IV STI L HNLGL+VVAEGVES+E L+ GCDQ QG++ +P+ Sbjct: 526 DIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPV 582 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 301 bits (772), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 257/445 (57%), Gaps = 5/445 (1%) Query: 347 SEIANRELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQV 406 ++I + + A D LTGL NR + ++A+ Q +R ++ +DLD F+ V Sbjct: 376 TQIKRYQEDLEHQANYDTLTGLANRNLLNERTQQALLQARRHDH-FLSLVFIDLDNFKLV 434 Query: 407 NDVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQATHILR 466 ND +GH GD+L+ V RL + G +AR+GGDEF +LL + + A ++ Sbjct: 435 NDSMGHGAGDELIANVGSRLQ-TCVRDGDTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQ 493 Query: 467 V-LEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-SGVVIYDPA 524 L +P+ ++ Q + + +GVA +P G+ S LL+ A+ AMY AK G + Y Sbjct: 494 AELIKPMWIRGQEIVVTCSMGVARFPEDGEDSESLLANADTAMYRAKSSGRNNFQFYTKE 553 Query: 525 IDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDN 584 ++ +S E LSL S+L AL+ DE L QP+++L G VIG EAL+RW HP++G + P + Sbjct: 554 MNATSGERLSLESDLWHALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMD 613 Query: 585 FIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQELPVAFAAI 643 FIP AE G I + +W++E + QLQ +GL ++ ++NLS R L D+ + ++ Sbjct: 614 FIPMAECNGLIIPIGIWVLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSV 673 Query: 644 LERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLP 703 +E L P L LE+TES +M + TL L+ MG LS+DDFGTG+SSLAYLK P Sbjct: 674 IEAIGLDPHYLELEVTESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFP 733 Query: 704 VDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQG 763 +D LKID+SF+ D DA I ++ I L H L ++V+AEGVE E L++ GCD+G Sbjct: 734 IDRLKIDQSFIFNCDSDPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEG 793 Query: 764 QGYFMGKPMPVEHFLEWRQQWRVPH 788 QGYF+ +P+ + + + PH Sbjct: 794 QGYFISRPLTFDDLRMFLLTGKNPH 818 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 296 bits (757), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 174/442 (39%), Positives = 251/442 (56%), Gaps = 9/442 (2%) Query: 342 FETMRSEIANRELKISRLAYQ---DHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMM 398 FE I R+L + + +Q D LTGLPNR D +++A+ R G + I + Sbjct: 266 FEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTA-IAFL 324 Query: 399 DLDRFQQVNDVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGAL 458 DLD+F+ +ND LGH GD+LL+ A RL+ L +AR GGDEF +LL + ++ Sbjct: 325 DLDQFKFINDSLGHQVGDELLKITAQRLTS-CLRESDTVARQGGDEFVLLLTSQPSEESI 383 Query: 459 AQATH-ILRVLEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-S 516 +L + QP + +GV P G+ + LL A+ AMY AK G + Sbjct: 384 THTMQRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRN 443 Query: 517 GVVIYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPE 576 + ++ ++ + L+LL+ LR+A+ EF+L+ QPK+ L G +IGAEAL+RW E Sbjct: 444 NFQYFATEMNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSAE 503 Query: 577 KGFVGPDNFIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQE 635 G V P +FIP AE TG I + +W++E + Q G + + SVNLS+R L + Sbjct: 504 -GMVSPGSFIPLAEETGLIIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGD 562 Query: 636 LPVAFAAILERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSS 695 + +L L L LEITES + D ++ L RL +G +S+DDFGTGYSS Sbjct: 563 IVEQVEQVLAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSS 622 Query: 696 LAYLKSLPVDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLL 755 L+YLK PVD LKID+SFV +A QD A IV++ I LGHNL L V+AEG+E+EE + L Sbjct: 623 LSYLKRFPVDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFL 682 Query: 756 RQMGCDQGQGYFMGKPMPVEHF 777 + C++GQGY M +P+ +HF Sbjct: 683 LKSACNEGQGYLMSRPVSHQHF 704 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,389,229 Number of extensions: 55418 Number of successful extensions: 343 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 33 Length of query: 809 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 720 Effective length of database: 707,092 Effective search space: 509106240 Effective search space used: 509106240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)