BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2732.p
         (445 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094778|ref|YP_001099853.1| hypothetical protein HEAR1563 [...    99   5e-22

>gi|134094778|ref|YP_001099853.1| hypothetical protein HEAR1563
           [Herminiimonas arsenicoxydans]
          Length = 406

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 128/301 (42%), Gaps = 53/301 (17%)

Query: 77  LPPFFQNLLPEGQLRKHLIQRAGLAPD-DEFGLLAYCGRDLPGDVSALAEELDERELGRL 135
           LP   +  LPEG L   + +R G     D+F +LA  G D+ G VS     L+E  +   
Sbjct: 61  LPGVLRQNLPEGYLLHWIRERFGKTMKMDDFNILALTGSDMIGRVSV---SLNENHVE-- 115

Query: 136 LGQGHDSYEMSSGQLPVPGGESL--------------SGVQPKLALV----QEPGGRYVM 177
               H   E  +  L   G ESL              SGVQPK+  V    +E   + VM
Sbjct: 116 ----HAKAENLNALLSWKGSESLFDYLAEKYAGTSGISGVQPKVLAVAYEDKETVDKGVM 171

Query: 178 RSKDSQGSHFIAKLPATDYPNMPQVEFAALTLAAAAGVQTCRFSLEPLSAIADHLPFGLR 237
           + +       I K    DY  + + EF  +T+   AG+   +F L               
Sbjct: 172 KDR-----KLIIKASGVDYEGLAENEFHCMTMGMLAGLNVPKFWL--------------- 211

Query: 238 NDASRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPGAKYVGTY--AAIGVVLAERSSRG 295
           ++     +++RFD D P     L  ED   +TG     KY  +Y   A  + +   S+  
Sbjct: 212 SENKEVFVIERFDID-PISGEYLGFEDMTALTGKQNDGKYDSSYENVAKAIDIFSSSTYK 270

Query: 296 VEDVFELLRRIKVNELLGNFDAHLKNFSLLYHTPQA--AALSPAYDIVAYAAYVGGDGHA 353
            E + E  + + ++  + N DAHLKNF +LY TP+     LSP YDIV   AY+  D  A
Sbjct: 271 TESLAEFFKSLVLSIAVRNGDAHLKNFGMLYTTPETNDVRLSPLYDIVCTTAYIPRDTIA 330

Query: 354 L 354
           L
Sbjct: 331 L 331


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 827,100
Number of extensions: 34727
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 360
Effective length of database: 720,272
Effective search space: 259297920
Effective search space used: 259297920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)