BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2730.p (222 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 331 2e-92 gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 127 5e-31 gi|134094411|ref|YP_001099486.1| GntR family transcriptional reg... 79 3e-16 gi|134093377|ref|YP_001098452.1| GntR family transcriptional reg... 71 3e-14 gi|134095633|ref|YP_001100708.1| GntR family transcriptional reg... 67 7e-13 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 331 bits (848), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 163/211 (77%), Positives = 176/211 (83%) Query: 5 KTRSETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPR 64 K SE LRE+IEEMIAVGKL PG HLDET LA++FGVSRTPIREALIQLASMGI+ +RPR Sbjct: 2 KKHSEVLREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPR 61 Query: 65 RGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPD 124 RGAIVAEIGPQQLIEMFEVMAE EAMC RLAARRM+PA HA L A H AC+ ARDS+D D Sbjct: 62 RGAIVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAGHATLKATHLACEEARDSADSD 121 Query: 125 AYFYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDA 184 AYFY NE FH IY GS NSFL EQAR L RRLRPYRRLQLRVR+R++ SFDEH A VDA Sbjct: 122 AYFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQASFDEHGAVVDA 181 Query: 185 IIAGDAERTVEVLRQHIMIQGQRFADLVASL 215 II G E E+LRQHIMIQGQRF DL+ASL Sbjct: 182 IIEGKGELAAELLRQHIMIQGQRFTDLIASL 212 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 127 bits (318), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 110/190 (57%) Query: 13 ESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEI 72 E ++ +I G LAPG L+E + E+ G+SRTP+REA+ LAS G++++ P RGA V+++ Sbjct: 30 EHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAFVSKM 89 Query: 73 GPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFYLNEA 132 ++ E FE+M+ EA+ G LAA R++PAE A++ H+A R +D Y+ N+ Sbjct: 90 NDNEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLVCRAQNDLPGYYSRNQT 149 Query: 133 FHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDAIIAGDAER 192 H+ I + NS L + +++RRL R + + EH + A+ + D +R Sbjct: 150 IHNKINEAARNSMLRQIYLSINRRLLALRFKSNFQEAKWDRAIHEHDEMIKALESRDGKR 209 Query: 193 TVEVLRQHIM 202 +LRQH++ Sbjct: 210 LAAILRQHLL 219 >gi|134094411|ref|YP_001099486.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 248 Score = 78.6 bits (192), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MDTPKTR-SETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIV 59 M PK + ++ E +EE I ++ PG + E +L+E F + RTPIREA+ +LA ++ Sbjct: 32 MAGPKPKLTDLAYEQLEEAIITLRIPPGSVISELTLSEMFNIGRTPIREAIQRLAREHLL 91 Query: 60 EMRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARD 119 + P+RG +V E+ ++ +++ E E E + + AARR TPAE H A Sbjct: 92 LVLPQRGVMVPEVDLKKQLKLLETRREVERLICKSAARRATPAEREVFARLHDEFMHASS 151 Query: 120 SSDPDAYFYLNEAFHDHIYAGSHNSFLAEQARALH 154 ++D A+ + F+D + N F R +H Sbjct: 152 TNDDVAFMRSDREFNDLSLIAARNEFSEGAMRLMH 186 >gi|134093377|ref|YP_001098452.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 249 Score = 71.2 bits (173), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 1/155 (0%) Query: 1 MDTPKTR-SETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIV 59 M PK + ++ E IEE I ++ PG + E +L+E + RTPIREA+ +LA ++ Sbjct: 33 MAEPKVKLTDIAYEQIEEAIITLRIPPGSVVSELTLSEMLNIGRTPIREAIQRLAREHLL 92 Query: 60 EMRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARD 119 + P+RG ++ EI ++ +++ E E E + + AARR T E A H A Sbjct: 93 LVLPQRGLLIPEIDLKKQLKLLETRREVERLICKSAARRATEEERAAFARLHDEFMHASS 152 Query: 120 SSDPDAYFYLNEAFHDHIYAGSHNSFLAEQARALH 154 ++D ++ + F++ + N F R +H Sbjct: 153 TNDDVSFMRSDREFNELALIAARNEFAEGAMRLMH 187 >gi|134095633|ref|YP_001100708.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 67.0 bits (162), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%) Query: 15 IEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGP 74 +EEMI KL PG + E +L G RTP+REAL +LA G V++ PR G IV+EI Sbjct: 29 LEEMIVTLKLPPGSKISEKALNRSLGFGRTPLREALQRLAIEGSVKILPRSGVIVSEIDL 88 Query: 75 QQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFYLNEAFH 134 + M EV E E + AAR + + A + +D + + F+ Sbjct: 89 ADQLNMIEVRRELEKIIAGRAARLAMEDQRRVFSKLAEDFDRAAEENDSTIFIETDREFN 148 Query: 135 DHIYAGSHNSFLA 147 A + N ++A Sbjct: 149 ALSIATAQNKYVA 161 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 293,917 Number of extensions: 8041 Number of successful extensions: 48 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 6 Length of query: 222 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 144 Effective length of database: 743,337 Effective search space: 107040528 Effective search space used: 107040528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)