BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2729.p
         (337 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094689|ref|YP_001099764.1| putative signal peptide [Hermin...   365   e-102
gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-bindi...    79   2e-16
gi|134093396|ref|YP_001098471.1| putative TRAP-type C4-dicarboxy...    54   9e-09

>gi|134094689|ref|YP_001099764.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  365 bits (936), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 238/329 (72%), Gaps = 4/329 (1%)

Query: 6   FLGALAAAPLASAVPSVWAQSATLKISHQFPGGTITEGDFRDRLVRTFAQQVSERTKGAL 65
            +GA A    AS++    A +  +KISHQFPGG   + DFR RL   FAQ V +RT G L
Sbjct: 15  LIGAFAMGFSASSM----AATKIIKISHQFPGGDGADVDFRHRLAVKFAQDVEKRTNGEL 70

Query: 66  KFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQGASW 125
           KFEIYP +SL+K N+QFSA++ GALDM+++PL Y GG++PETN+GLMP LVTSY+QG  W
Sbjct: 71  KFEIYPSASLVKPNSQFSAMQTGALDMTVLPLAYEGGKIPETNLGLMPALVTSYEQGLRW 130

Query: 126 KNAEVGKELARVLGEKGVVIVSWIWQAGGVASRGKPIVDPADVKGMKVRGGSREMDLILK 185
           K A +GK L  V+  KGV I++W+WQAGGVAS+ K IV P+D K +K+RGGS+EMD++LK
Sbjct: 131 KTAPIGKALNDVVEGKGVKIITWVWQAGGVASKTKSIVQPSDAKDVKIRGGSKEMDMMLK 190

Query: 186 EAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYWYMFEPL 245
            AG ++  +PS+EIY AMQTG +DAA+TSSTS +SFRL EVAK +TT R   +W+MFEPL
Sbjct: 191 GAGGSITNVPSSEIYNAMQTGVLDAAVTSSTSLLSFRLYEVAKQVTTARKNTFWFMFEPL 250

Query: 246 MMSKAVFERLPKDQQAVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDLNAEVVK 305
           +M+K+ ++ L   QQ ++M VG  +E+FA + ++ DD+ + +VY K GA   D++     
Sbjct: 251 LMAKSTYDSLTPAQQKIVMEVGVSLEKFAMEESKKDDVRLGEVYAKNGATASDMDDAAFA 310

Query: 306 KWQDIARNTAWKDFAGRNASCAKLLALAE 334
           KW+++A+ TAWK+FA    +  +LL LA+
Sbjct: 311 KWRELAKQTAWKNFAENVKNGQQLLDLAQ 339


>gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-binding
           periplasmic protein precursor [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 20/264 (7%)

Query: 6   FLGALAAAPLASAVPSVWAQSAT-LKISHQFPGGTITEGDFRDRLVRTFAQQVSERTKGA 64
           FL ALA   L++A   V AQ+ T +K SH   G    +G    R    F + + E ++G 
Sbjct: 10  FLLALA---LSTAGTIVSAQATTVIKFSH-VAGSDTPKG----RAALHFKELLEESSRGR 61

Query: 65  LKFEIYPGSSLMKTNAQFSALRKGALDM---SLVPLNYAGGEVPETNIGLMPGLVTSYQQ 121
           ++ ++YP + L K + +  AL+ GA+ M   SL  L   G +  +  +  +P L  +   
Sbjct: 62  IRVDVYPNNQLYKESDELEALQLGAVQMVAPSLAKLAQFGAQ--DFEVFDLPYLFANKDA 119

Query: 122 GASWKNAEVGKELARVLGEKGVVIVSWIWQAG-GVASRGKPIVDPADVKGMKVR-GGSRE 179
            A      +GK L + L  KG+V +++ W  G  + S  KP+  PAD  GMK+R   S  
Sbjct: 120 VARVTEGILGKALLKRLDSKGMVGLAY-WDNGFKIMSANKPLKMPADFVGMKMRVHSSPV 178

Query: 180 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYW 239
           ++  ++  GA    + +NE+Y A+++G +D   ++  +F + +L +V   +T      + 
Sbjct: 179 LESQMRALGAIPQIMDANEVYFALRSGVIDGLESAPLNFYARKLYDVQSHITVSN---HG 235

Query: 240 YMFEPLMMSKAVFERLPKDQQAVI 263
           Y+   ++++K  ++ LP D + +I
Sbjct: 236 YLGSAVIVNKKFWDGLPFDLRKMI 259


>gi|134093396|ref|YP_001098471.1| putative TRAP-type
           C4-dicarboxylate transport system, periplasmic component
           [Herminiimonas arsenicoxydans]
          Length = 383

 Score = 54.3 bits (129), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 53  FAQQVSERTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLM 112
           FA++V++ T G LK E+ P  +++       A+ KG LD     + Y  G+  ++ I L 
Sbjct: 64  FAKKVNDMTGGELKIEVLPAGAVVPAFGLLDAVSKGTLDGGHGVMGYNYGK--QSAIALW 121

Query: 113 ---PGLVTSYQQGASWKNAEVGKE-LARVLGEKGVVIVSWIWQAGGVASRG---KPIVDP 165
              P          +W     GK  L ++    G  +VS++         G   KPI   
Sbjct: 122 TSGPVFGMDANMVLAWHKYGGGKALLEKLYSSIGANVVSFLTGPMPTQPLGWFKKPITKK 181

Query: 166 ADVKGMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTS 217
            D KG+K R     +DL     GAAV  LP  EI  AM  G +D A  ++ S
Sbjct: 182 EDFKGLKFRTNGLAIDL-FTAMGAAVNALPGGEIVPAMDRGLLDGAEFNNAS 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 567,722
Number of extensions: 21672
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 4
Length of query: 337
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 255
Effective length of database: 730,157
Effective search space: 186190035
Effective search space used: 186190035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)