BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2728.p
         (192 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094690|ref|YP_001099765.1| hypothetical protein HEAR1467 [...   119   7e-29

>gi|134094690|ref|YP_001099765.1| hypothetical protein HEAR1467
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  119 bits (299), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 92/151 (60%)

Query: 30  LRAYHRVAVFLGMIALLVTSCILTYSVVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQ 89
           LRA++R    L  + +++ +  L Y VV RY+     DW  E  V++L+   FL +AY Q
Sbjct: 12  LRAFNRWMAILSALLIVLATLALVYEVVTRYYLRIANDWMIEFCVYLLIAATFLAAAYTQ 71

Query: 90  SLRGHIGIEALAGLLSPLANQVRMFIVDMVSLLFCAFFTWKSWTLFHEAWVEGQTTSSTF 149
           + RGH+GIE L  ++SP  N+ R+   D +SL+   F    +W     A+ +G +TSST+
Sbjct: 72  AERGHVGIEVLDEVMSPKWNKYRLMAGDFLSLIVVFFVARNAWQYAWNAYQQGWSTSSTW 131

Query: 150 APPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180
           APPLWIPY  MA G++ + LQ+++Q++  +T
Sbjct: 132 APPLWIPYFFMAFGLSTMALQMVMQIIETLT 162


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.137    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 266,354
Number of extensions: 8723
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 115
Effective length of database: 746,632
Effective search space: 85862680
Effective search space used: 85862680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)